| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0275 |
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| Symbol | |
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| ID | 5693093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 314319 |
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| End bp | 316082 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 641262855 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001528162 |
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| Protein GI | 158520292 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATATGA ACCGTATGAC AATATCAATT CTGCTCGTTG TTTCTATTTT AACTTTCAAT
TCAGCCTTCT TGTGTGCGGA TAGTAAATTT CTTGATTCTT CAAAAACACC AGAAAAAGAG
ATGGACTATA AGTTCATAGC ACCGAAGACG ACAATAGAGA CAGGAGTAAT AATGACAAAA
GACGGTCAAA ATATTGTAGC TCGAAAAATT TCTGAGGATA ACAATGTTAT AGTCTATTAT
TTAGGGCATA TAGCCCATGG AATAACCGTA GACAAAGTGT TAAGCATTGC GAACACAAGT
GGATCGGGAC TGATAGGCTT TTCAGAAGGT GATCGGCGAG ATAGTTTGAA CGGTTCTGGT
TTCCAGGCTG AACCCAAGAC GTCTATTACA AAAGTAGAAA ATTTGGATGA TGTAAATTTT
ATCGATGGAG GAAAATTTTT TGAAAAAGGA AACTATACAG AAGCGATTCA AGCATATAGT
TTATATTTGA GATATTACCC TAAATCCCCA ACCGGATATT CAAATTTGGG TTTATGTTAT
TTACAAAAGG GAAATTTTAA AGAGGCTCTA AAGTACCATA CGAAAGCGAT AGAGCTTGAT
GACAATAGAG CAAATCTGTA TATAGCGAGA AGTGTTTCAT ACTGGAAAAT GGGATTAAAT
GACCTTGCTT TTGCTGATAT AGAAAAAGCT ATTGAGTTAA ATCCCAATAA CAAGGATGCC
TATTTAAAGA AAGGAAAATT CCTGTTTAAT AAAGAAGAAT ACAAAAATGC TATCAAACCA
TTTTTAAAAT ATTTGGAATT GGGAGGCAAT AACTGGGAGG CACTATCAGC TTTGGGTTGG
GCATATCATA AAACCGACAA TGACAGAGAT GCACTAAAAT ATTTAATGAT CGCTCATCAA
AGTAACGAGG GTTCCTATGA TAATAATATA AGGATGGCCG ACGTTTACAG GGGGCTTAAG
GAATATGAAA ATGCTATAAA ATATTATACG TTGGCTTTGA ATACTGACAA AAAAGATATA
TTCCTCTATT TGTATAGAGG CATATCTTAT ATGGAAAAGG GAGACTATTC GCTAGCTGAA
TTGGATTTTA AAAAAGCACT TGAATTGAAG GAAAATGATC CTGTTGTATT GTGTAATTAT
GCACAACTTT ACATTTATCA AGACAAAGAT AGAAAAGCGA TACCTTTACT TAAAAAGGTT
TTAGAGGTAT CGAAAGATGA GGAATGTAAT ATTTGGTCGA AGTTTACCCT AGAGGAAATA
TCAAAAAGCC GTAAAAAGAC AAGAAACGTA ATTGCACTCT TTTTAATTTT TATTGCATTA
ATTTTTTTAA TATTGTTGGG CGTTTTAAAA CTAAAAAAAA GTGCAGGATT AATGAGAGTA
AATGTCACAA AAAAATTAAA ATATATATCG ACTGCAACTG TTCTTATGTG TGGTGTAATG
TTTTTTATAC TGTCTCAACA AACAGAAAAA AGTACGGAAA GAGCTAAGGC AGAGCCAGCA
ATACGACAGG CACTTCAGGC CGTTGATTTA GGTCGGTATT CTATAGCGTC AGATTTCTAT
CATAAGGCAA TTGAATTCGA TCCTGACCGG AAAGAAGAGT TTGATAGAAG AATTAATGCA
ATGATGGACC GTAGGCTACA AGAACTGTGG TCTGGTCAAT ATGACTTCGG TAAAATGAGA
CGGTACCCTG AATGGGAGGC GGCACGGAAG GCAGATGCGT TTGTTCAAAA GGAGATACAA
AAATTTCACA GGGATTTTAA ATAA
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| Protein sequence | MDMNRMTISI LLVVSILTFN SAFLCADSKF LDSSKTPEKE MDYKFIAPKT TIETGVIMTK
DGQNIVARKI SEDNNVIVYY LGHIAHGITV DKVLSIANTS GSGLIGFSEG DRRDSLNGSG
FQAEPKTSIT KVENLDDVNF IDGGKFFEKG NYTEAIQAYS LYLRYYPKSP TGYSNLGLCY
LQKGNFKEAL KYHTKAIELD DNRANLYIAR SVSYWKMGLN DLAFADIEKA IELNPNNKDA
YLKKGKFLFN KEEYKNAIKP FLKYLELGGN NWEALSALGW AYHKTDNDRD ALKYLMIAHQ
SNEGSYDNNI RMADVYRGLK EYENAIKYYT LALNTDKKDI FLYLYRGISY MEKGDYSLAE
LDFKKALELK ENDPVVLCNY AQLYIYQDKD RKAIPLLKKV LEVSKDEECN IWSKFTLEEI
SKSRKKTRNV IALFLIFIAL IFLILLGVLK LKKSAGLMRV NVTKKLKYIS TATVLMCGVM
FFILSQQTEK STERAKAEPA IRQALQAVDL GRYSIASDFY HKAIEFDPDR KEEFDRRINA
MMDRRLQELW SGQYDFGKMR RYPEWEAARK ADAFVQKEIQ KFHRDFK
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