Gene Dole_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0028 
Symbol 
ID5692842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand+ 
Start bp29588 
End bp30250 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content62% 
IMG OID641262604 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_001527915 
Protein GI158520045 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0137537 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACATT CAGATAAAAA CCCGATGGTG GTGCGGCAGA TAAAACTGTC CCGAATGGAG 
ACCTTCTGCT ACCTGGTGGG GGACCCGGCC TCCAAAACCG GGCTGTTGAT TGACCCGGCC 
TTTGACACCG GCCGGATTCT GGCCGCGGCC GCAACCGCGG GGTTTACCAT CACCGCCGTG 
GTTAACACCC ACGGCCACGC GGACCACTGT TGCGGCAACG CAGCCGTCAT GGGCGCTTCC 
GGTGCCCGGC TGCATATTCA CAAAAAAGAT GCCCGGCAAC TGACCGGATT TTTTAACGGC 
GTTCTGTGCC GGCTCCTGGG GGGCCGGCCG TCGCCCCGTC CCGATGTCGT GTTACAGCAC 
GGTGAAGCGG TGGTGCTGGG ACAGACCACC CTCACCGTGC TGCACACGCC GGGCCACACA 
CCAGGCAGCA TCTGCCTCTA TATGCCGGGC CACCTGTTTG CCGGCGACAC CCTGTTTGTC 
GGCTCCGCCG GACGCACCGA CCTTTCCGGC GGGTCGATAA AAGACCTTCA CGCCTCCATC 
CGCACCCGTC TTTTTCCCCT GCCTGACGAC ACCCGGGTCT GGCCCGGCCA CGACTATGGA 
GACCGGCCCG TTTCCACCAT CGGCCATGAA AAAAAGACCA ATCCGTTTAT GCAGGCCGAT 
TAA
 
Protein sequence
MQHSDKNPMV VRQIKLSRME TFCYLVGDPA SKTGLLIDPA FDTGRILAAA ATAGFTITAV 
VNTHGHADHC CGNAAVMGAS GARLHIHKKD ARQLTGFFNG VLCRLLGGRP SPRPDVVLQH 
GEAVVLGQTT LTVLHTPGHT PGSICLYMPG HLFAGDTLFV GSAGRTDLSG GSIKDLHASI 
RTRLFPLPDD TRVWPGHDYG DRPVSTIGHE KKTNPFMQAD