| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7240 |
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| Symbol | |
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| ID | 5675541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 8841018 |
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| End bp | 8842592 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 79% |
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| IMG OID | 641246077 |
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| Product | putative RNA polymerase sigma factor |
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| Protein accession | YP_001511465 |
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| Protein GI | 158318957 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00570923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.19325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAGGT CAGGAACGCC GTCACGGGGA GATGCTGAGC GGATGAACGA CGACGCGGAC
CTGGTGGCGC GGGTTCGGCG CGGCGATCGT CAGGCTTTCG ATGACCTGTA CAACCGCTAC
GCCGACGACG TCTTCTCGAT GTGCCTGCTG ATCCTCGGCG ACCCGACGGT CGCGCGGGCG
GCCGCCGGCA CCGCGTTCGC CCTCGTGGCG AGGACGAGGC TCAACCCGCT CTCGGACCCG
ACCCGACTGC GCCCCTGGCT ACTGGAGCTC GCCCGCGGCA GCGCGCTGGC CTGGTCGGGA
TCCCCGCAGG CGCGCAGCGT TCCCGTCCCG CACGGCGTCT CACCCGAGGA GCTGCTCGAC
GGCGCCGTGG TGCCCGCGCC GGCCAGCCTG CGGGCCGGGC TGGAGCGCAC CTTCGACCGC
GCGGCCGTCG CCGCCGAAGC CGCCGCGGCG GCCGCGAGCC GCCGAGCCGC CGAGCGCGCC
GGCTCCGAGT TCGCCGGTAC CGAGCCTGCG GGCGTCGCGC CTGCCGGAGT CGACGACCTG
GCCGCCGCGG CGGGCCTGGC TGCCGGCGGG GTGCCGGGCC ATCCCGGTGC CGCCGCCCCG
AGCCGCCCGG CCGTCCCGGC CTTCACCGCC TCGGCCTTCC CGACCCAGGA CCGTCGCGGT
CCGGCACCGG TCGCGGACGG TCGCCCCGCG GGCGGCTACG CCCCTGAGGA CGCCGTAACC
ATCATCTCGC CGTCCACCGG GCAGTTGCGC ACGCAGCGCC AGGACGACCA GCATGAGCAG
ACCATGGCAC CGGCCGGCGC CGGCGCCCAG GACCGGTACG GGAACGTCCT CCCGCTGATC
CCCGTGGACC GCGCCTACCC GGGTGACGCC GCAGGGTCCG GCGGGTTCGC CGACTTCCGG
GCCCGGCCCG CGATCGCCGT GGCCGCCGCC CTGGTCGTCG CCGTCGCCGG GCTCACCGCC
GTCATCTCCT GGCCCGCGAG CGAGGCCGCG CTGGTCGCCG ACGGCGGCCC CGGCATCGTC
GCGATCGCCC CCTCGGCGCC ACCCGGCCCC CTGCCGACGA TCGCCCGGCC GCCGGTCGCG
TCCGAGGCGC CCTCGCCCAC TGTGGTGCCG ACCGTCGCGG GCGCCTACAC GAGCCGTCCC
GGTGTATCCC GCCCCGGCCA GGTCGTCCGC GAGGTCGACA CCGGCCAGCG CGGCGCCGAC
CAGCCCGCCG CACCGCCCGC GCCGGCCCCG AGCACACCGC CGCCGCCCAC CACGAACGCG
CCCGCGCCGC CGGCGACGAC CCCGCCGACG ACACCGCCCG CGACGACCGG CCCCACCACG
ACCGCCGGCC CGACGACGGC GCCCCCGGCC ACCACGGGAC CCCCGGCCAC GGGCACCCCG
ACGACGCCGC CGGACGGCGA GGCTCCGCCG CCGGCGACGA CCTCCGAGCC CGCCCCGCCC
CCGAGCACCG CTCCGGCCCC GGCGCCGCCG ACCAGTGAGG CACCGGCCCC GCCGGCGACG
ACCGCACCGG GACCGGCCGG CGACCAGCGC CTCCCACCGG GCACCCGAGA CGTGCAGAGC
CCGTTCCCGG TCTAA
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| Protein sequence | MPRSGTPSRG DAERMNDDAD LVARVRRGDR QAFDDLYNRY ADDVFSMCLL ILGDPTVARA
AAGTAFALVA RTRLNPLSDP TRLRPWLLEL ARGSALAWSG SPQARSVPVP HGVSPEELLD
GAVVPAPASL RAGLERTFDR AAVAAEAAAA AASRRAAERA GSEFAGTEPA GVAPAGVDDL
AAAAGLAAGG VPGHPGAAAP SRPAVPAFTA SAFPTQDRRG PAPVADGRPA GGYAPEDAVT
IISPSTGQLR TQRQDDQHEQ TMAPAGAGAQ DRYGNVLPLI PVDRAYPGDA AGSGGFADFR
ARPAIAVAAA LVVAVAGLTA VISWPASEAA LVADGGPGIV AIAPSAPPGP LPTIARPPVA
SEAPSPTVVP TVAGAYTSRP GVSRPGQVVR EVDTGQRGAD QPAAPPAPAP STPPPPTTNA
PAPPATTPPT TPPATTGPTT TAGPTTAPPA TTGPPATGTP TTPPDGEAPP PATTSEPAPP
PSTAPAPAPP TSEAPAPPAT TAPGPAGDQR LPPGTRDVQS PFPV
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