Gene Franean1_7119 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_7119 
Symbol 
ID5675799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp8689338 
End bp8689886 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content71% 
IMG OID641245955 
ProductNLP/P60 protein 
Protein accessionYP_001511346 
Protein GI158318838 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACCT CGGCTGATGA AGCCGCGCCA GGGAGCGAAA TCGGGACGGG CAAGGTCGGC 
ATAACGCCAG CCGGGCAGGC GTATGTGGCG CGGGTTCTTG CTGTTGCCGC GTCCTACGGC
CAGGATTTCG CTCCTGCTGC TGCGGACGGC GCTGGTGAGG TCGCCGCGAC GTGGGCGCTT
TCTCAGGTGG GTGTCCCGTA TGTGTGGGGC GGTGAGACGC CGGGGGTCGG GTTCGACTGT
TCTGGGCTGA CCCAGGCTGC TTTCGAGGTG GCCGGGATCG GGCTGCCTCG GGTGGCTCAG
GGCCAGTTCG ACGCCGGGCC CCGCCTTCCG GCTGGTGCCG GGCTGCGGCC TGGTGACTTG
GTGTTCTTTG GTGGCGGGCC GGCGGACGTC ACCCATGTCG GTCTCTACCT GGGAGTCCGG
GATGGCCGGC CGGTGATGGT GGACGCGCCT CACCGAGGCG CCGTCGTCCG GGTCGAGGCG
TTCCCGACCG TGGTAGGGGC CGCCTGGGGT GCGGACATCT ACCTGGGCGC CACCCGACCC
GCCCCCTGA
 
Protein sequence
MPTSADEAAP GSEIGTGKVG ITPAGQAYVA RVLAVAASYG QDFAPAAADG AGEVAATWAL 
SQVGVPYVWG GETPGVGFDC SGLTQAAFEV AGIGLPRVAQ GQFDAGPRLP AGAGLRPGDL
VFFGGGPADV THVGLYLGVR DGRPVMVDAP HRGAVVRVEA FPTVVGAAWG ADIYLGATRP
AP