Gene Franean1_7116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_7116 
Symbol 
ID5675420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp8686609 
End bp8687775 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content70% 
IMG OID641245953 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001511344 
Protein GI158318836 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTCC GTCCGCCAGT GGCCGATCGG CTGCTGGCGG CGGCCTCGTT CGTGCTCGGC 
GTCGTCGTCG CGATCACGCT CGAGGCGGTC GATTTCGACG GCGAGCGAAG CGTAGATCTG
TGGGCGATCG CGCTCCTGGG CGCGATGTCG GCGGCGTTAC TGGCCCGCCG GCGCTGGCCG
ATCCTCGTCG TCCTCGCGGT CCTCGCAGTG TCGACGCCGT ACCACGTCCT CGACTATCCC
CATGAGGCCA CGATGCCGGC CTCGCTTGTG GCGGCGTTCA CGGCGGCGCG CTGCAGCGAG
CCACCGCGGC GGGCCCTCGC CGCCTTGGTG GCGGTGGCCG CGGTGACCGT GCCGGTCCTC
GCCGACGAGG CGTCGGGGGC ACCTGACGAT GCTCTCCTCG GCGTCGGCTG GCTGTTCATG
GCCTTCTTTG CCGGGCTGGC GGTCCGCTTC CATCAAAACT GGAAGGCCGC CGTCACCGCG
CGGCTTGAGC AGGAGCGTGC CGACGAGGTC GAGCGGCGGG TCGCCGAGGA GCGGGTCCTG
ATCGCTGCCG AGCTGCACGA CGTCCTAGCG CACGGCCTCG CGGTCGCGAA CGTCCAGGCT
TCCGTCGCTG CGCACCTGAT CGACCAGCTG CCGAGGCGCG GGGATGCGTC GCTGCAGGAG
CTGTCCAGAA CGCTGCATAA CCTGTCGGAC ACGAGCCGGG CCACACTCCA TGAGCTGCGT
GCCGTTCTGG ACGTGCTGCA TGGTGGCGAG GCCGAGCCAA CCGAGCCAGT GCCCCACCTC
GGCGAGCTGC AGCGTCTGGT GGAGATGGCC GAGGCGGCTG ATATCCGAGT CGACGTGGAG
GCTGACGGGC TCCCGGACGA GTTACCGTCG ACGGTGTCCG TCGTGGCCTA TCGGATCATC
CAGGAGTCGC TCACCAATGT CATTCGACAC TCGACGGCCA AGCACGCGAC CGTCCGGCTC
GGCCAGAACG GCCACCGGCT GCGGATCGCG GTCGTCGATC ACGGGCCCGC GCGACCGAGC
TCAACCGTGA CACCCGGCTT CGGGATCGCC GGGATGACAG GGCGAGCACA GGCCGTCGGT
GGCGAATTGT CCGCCGGCCC GGGCGAGTCC GGAGGATTCG AGGTATGGGC CAGCCTGCCG
CTGCCGGAGA TCTGGCGGGT GCCGTAG
 
Protein sequence
MALRPPVADR LLAAASFVLG VVVAITLEAV DFDGERSVDL WAIALLGAMS AALLARRRWP 
ILVVLAVLAV STPYHVLDYP HEATMPASLV AAFTAARCSE PPRRALAALV AVAAVTVPVL
ADEASGAPDD ALLGVGWLFM AFFAGLAVRF HQNWKAAVTA RLEQERADEV ERRVAEERVL
IAAELHDVLA HGLAVANVQA SVAAHLIDQL PRRGDASLQE LSRTLHNLSD TSRATLHELR
AVLDVLHGGE AEPTEPVPHL GELQRLVEMA EAADIRVDVE ADGLPDELPS TVSVVAYRII
QESLTNVIRH STAKHATVRL GQNGHRLRIA VVDHGPARPS STVTPGFGIA GMTGRAQAVG
GELSAGPGES GGFEVWASLP LPEIWRVP