| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7015 |
|---|
| Symbol | |
|---|
| ID | 5675326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8554402 |
|---|
| End bp | 8555274 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641245861 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001511252 |
|---|
| Protein GI | 158318744 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCGT CGTCCGACAT CAACCCGTTA AACTTCCTCA GCATCCTCAC CGGCTCCTTC
GCTACGCCGG CAGGCGAGAA CCCCACCGCG GCGATGATCG AGTCGGCCTA TCGACACCAC
CGCATCGACG CGTGCTACAT CAACTGCGAA GTCGCTCCCG AGGCTCTGGG GGATGCCGTA
CGCGGGGCCC GCGCAATGGG GTGGGTCGGC TTCAACTGCT CGATCCCGCA CAAGGTCGCG
GTGATCGAGC ACCTCGACGG CCTCGGCGAA TCCGCCACGA TCATCGGCGC CGTCAACTGC
GCCGTCCGCC GCGACGACGG GTGGATCGGT GAGAACACCG ACGGGCAGGG CTTCCTGACC
TCGCTGCGCG CCCAGGTCGA TCCCGCCGGG CAGCATGTCG TCCTCTTCGG TGCTGGCGGG
GCCGCCCGCG CGATCGCGGT CGAGACCGCG CTGGCCGGGG CGGCATCCAT CACCGTGGTG
AACCGCGGCA CCGGGCGCGG CCGTGAGCTG TCCCGGCTCA TCGCGGCGAA GACACCCACG
GCGGCCGAGT TCGTCCGGTG GGACGGGCCG TATCAGGTAC CCGAGTGGGC GAGCATCGTG
GTGAACGCGA CGTCGATCGG GTTGTTCCCA GACGCCGATG CCCGGCTGAA CCTCGACCTG
GACAGCCTGC GGCCGCACAT GCTGGTGGCC GATGTCATTC CCAACCCCCC GCGCACTCGG
CTGCAACGGG ATGCGGCCGA GCGCGGCTGC GTTACCCTCG ACGGACTGGG GATGCTGGTC
AACCAGGGAG TCATCAGCAT CCGGCACTGG CTCGGTGTGG ACGTCGACCC AGCCGTGATG
CGCGAGAGAC TGGCAGAAAT ACTCGGATCT TGA
|
|---|
| Protein sequence | MSASSDINPL NFLSILTGSF ATPAGENPTA AMIESAYRHH RIDACYINCE VAPEALGDAV
RGARAMGWVG FNCSIPHKVA VIEHLDGLGE SATIIGAVNC AVRRDDGWIG ENTDGQGFLT
SLRAQVDPAG QHVVLFGAGG AARAIAVETA LAGAASITVV NRGTGRGREL SRLIAAKTPT
AAEFVRWDGP YQVPEWASIV VNATSIGLFP DADARLNLDL DSLRPHMLVA DVIPNPPRTR
LQRDAAERGC VTLDGLGMLV NQGVISIRHW LGVDVDPAVM RERLAEILGS
|
|---|
| |