| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6965 |
|---|
| Symbol | |
|---|
| ID | 5675278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8490718 |
|---|
| End bp | 8492364 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641245814 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001511205 |
|---|
| Protein GI | 158318697 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.69368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.965318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGCGG AGCGAGACAT CATCCAGCCG AGGACGTCCG CTGACGAGGC CGCTGACGAG
GCCGCTGACG AGGCGGCGGG CGAGGCGGCG GACGAAGTCG CGGAGCCGAA GCCGCCGGGC
CCCACCGCGG TGGCTCGGCC GTCCGGCGGA GGGGGGCCGC ACCCCCGCCC GGGCCTGTTG
CTGGGCGTGC TCGTCTACTG CGGGCTCGTG ATCGCCGTCA TCGGGACGCT GGGCACACCA
CTGATCCCGA CGATCGCGGC CACCCAGCAC GTCTCGCTGG ACAGCGCCCA GTGGCTGCTC
ACCCTCACAC TGCTGACCGG CGCCGCGTCC ACTCCGCTGA TCGGGCGTCT CGGCGACGGG
CCGCACCGGC GGACCGTGCT GCTCGCCGGC CTGGGCGCCG TCGCGGTCGG CTCCGTTCTC
TCCGCCACCG CCAACGGCTT CGCGCAGCTG CTGGTCGGGC GGGGCCTGAT GGGCGTCGGG
ATGGGCCTGA TGCCGCTGGC GCTGGCGCTC GCCCGTGACC TGCTGCCCCC GCACAAAATG
GCTCCGGGGG TCGCCGCCCT GTCCATCACG GTCGCGACCG GCGCCGGCCT GGGCTACCCA
CTCAGCGGGC TACTCGCGGA CACGTTCGAC TACCACGCCG GCTTCTGGGT CGCCGCCGCG
CTGGCGGCTG CCGGGATGGC GGCCGTGCTC GTGGCCGTCC CGGGCCGGGC GAGCGCGCGG
ACCTCCCATG GGCGGGTCGA CCTGCGGGGC GCGGTGCTGT TCGCCGCGGC GCTGAGCCCG
GTGCTGCTCG CGCTGAGCGA GGGCGAGTCG TGGGGCTGGC TGTCACCGGC GGTCATCGCA
CTGCTCGTGG GTGGCATCGG CTGCGGGGTG GCCTGGGCCC TGGTCGAGCT GCGGACGGAC
AACCCGCTGA TAGAGCTGAA GTACCTGGCG GCGCGGCCGG TGCTCATCGC CGACATGTGC
GCGGCGCTGG CCGGCTTCGG CATGTTCAAC GCGATGACGT TGATCAACCG GCTGGCGCAG
GCCCCGACCT CGACCGGCTA CGGCTTCGGC GCGTCACCGG CCGTGCTCGG CCTGGTGATC
CTGCCCCTGT CGGCCGGGAC GGTGCTGGCC AGCCGGTGGT CGCGCTGGCT GGGCCCGCGC
ACCGGCGGTG GGCGGGGCCT GCTGTTGTGC GGCCTGATGG CGGTCGCCCT CGCCCTGTTC
GGCCTGGCCG TCAGCCACGA CCACCTCGTC GAGCTGGGCG CGGCCACGTT CCTGTTCGGG
GTCGGCATCG GACTGGCCTT CGCCGCGATG CCCGCCCTGA TCATGGGAGC CGTCCCGCCG
CACGAGACGG GCAGCGCGAC CAGCTTCAAC CAGGTGCTGC GCACGGCTGG CGGCTCGGTG
GGAAGCGCGC TCGGCGCGGC GCTGCTCGCC GCCCACACAC CGGCCGGTTC GGTCGAGCCG
ACCAACAGCG GGTACACGGT GGCGTTCGTC GTGGCCGGCG GGGTCTGCGC GCTGGCCGCG
CTCGCGGCGC TGGCCCTGCC CGGCACCTCG TCCGCGGCGA CCCGCCCGTT GGGGGCGGCG
CGCCGGACGG AACTGGAGAC ACTGGAGGAG GAATCGGCGG GCTCCACCGC CGCGGGACTC
GTCATGGCGG AGGATGTCCG GTCATGA
|
|---|
| Protein sequence | MRAERDIIQP RTSADEAADE AADEAAGEAA DEVAEPKPPG PTAVARPSGG GGPHPRPGLL
LGVLVYCGLV IAVIGTLGTP LIPTIAATQH VSLDSAQWLL TLTLLTGAAS TPLIGRLGDG
PHRRTVLLAG LGAVAVGSVL SATANGFAQL LVGRGLMGVG MGLMPLALAL ARDLLPPHKM
APGVAALSIT VATGAGLGYP LSGLLADTFD YHAGFWVAAA LAAAGMAAVL VAVPGRASAR
TSHGRVDLRG AVLFAAALSP VLLALSEGES WGWLSPAVIA LLVGGIGCGV AWALVELRTD
NPLIELKYLA ARPVLIADMC AALAGFGMFN AMTLINRLAQ APTSTGYGFG ASPAVLGLVI
LPLSAGTVLA SRWSRWLGPR TGGGRGLLLC GLMAVALALF GLAVSHDHLV ELGAATFLFG
VGIGLAFAAM PALIMGAVPP HETGSATSFN QVLRTAGGSV GSALGAALLA AHTPAGSVEP
TNSGYTVAFV VAGGVCALAA LAALALPGTS SAATRPLGAA RRTELETLEE ESAGSTAAGL
VMAEDVRS
|
|---|
| |