| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6921 |
|---|
| Symbol | |
|---|
| ID | 5675234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8429644 |
|---|
| End bp | 8430960 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641245770 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001511161 |
|---|
| Protein GI | 158318653 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.858592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGGAGT TCGAGACCGA CCCGGCCTAC CAGGAGCAGC TCGACTGGGT CGACACCTTC
GTCCGGGACG TCGTCGAGCC GCTGGACTTC GTCCTCGACA ACCCGTTCGA CAAGCGGGAC
TCCCGGGCGC AGGCGATCGT CCGGCCGCTC AAGGAGGAGG TGAAGGCACG CGGCCTGTGG
GCCTGCCATC TCGGGCCCGA ACTGGGCGGT CAGGGCTACG GCCAGGTGCG GCTCGCCCTT
CTCAACGAGA TCCTGGGCCG CTCCCGGTGG GCGCCGTCGA TCTTCGGCTG CCAGGCCCCC
GACTCCGGGA ACGCCGAGAT CCTGGCCCAC TTCGGTACGC CGGAGCAGAA GGCCAGGTAT
CTGGAGCCGC TGCTCGAGGG CGACATCGCG TCCTGCTACT CGATGACCGA GCCGCGCGGC
GGTGCCGACC CGACCCTGTT CACCGTCCGC GCCGTGCGCG ACGGCGGCGA CTGGGTGATC
AACGGTGAGA AATGGTTCTC GACGAACGCC CGGCACGCCA GCTTCTTCAT CGTCATGGCC
GTCTCGAACC CCGACGTGGA CGCCTACAAG GGCATGTCGA TGTTCATCGT GCCGGCCGAG
ACGCCCGGGA TCACGATCGT GCGCAACCCC GGCGTCGCCA CCGAGCCCCC GGAACAGGGC
TCGTTGGGGG GCGTCCGGCA TGACCACGGC TATGTCCGCT ACACCGACGT CCGGGTGCCG
GCCGATCACC TGCTCGGCGG GGAGGGCGAC GCGTTCGCGA TCGCGCAGAC CCGCCTGGGC
GGCGGGCGGG TGCACCACGC GATGCGGACG GTGGCCCTGG CCCGCCACGC CTTCGACCTG
CTCTGCGAGC GGGCCGTCTC CCGCCAGACC CGGACGGGGC CGCTCGCGTC GCTGCAGATG
ACTCAGGAGA AGGTCGCTGA CAGCTGGATT GACATCGAGT GCTTCCGGCT GCTGGTGCTG
CGCACCGCCT GGCTCATCGA CAAGCACAAG GACTACCGGA AGGTCCGCAA GGACATCTCC
GCGGTCAAGG TGATGCTGCC CCGCGTCCTG CACGACGTCG CCCAGCGGGC CCTGCGCATC
CACGGGTCGC TCGGGGTGTC CAACGAGATG CCGTTCGTGA GCATGATGGT GACCGCGGAG
GCGCTCGGCA TCGCCGACGG CCCCACTGAG GTCCACAAGG TCACGCTGGC GCGTCAGGTG
CTCCGGCAGT ACACCCCGGT CGAGACGCTC TTCCCGTCCG GTCACCTGCC CACCCTGCGG
GAACAGGCCT TCGCCGCCTT CGCCGACCGC CTCGAACACG AGGCCGCCGA GCTGTGA
|
|---|
| Protein sequence | MWEFETDPAY QEQLDWVDTF VRDVVEPLDF VLDNPFDKRD SRAQAIVRPL KEEVKARGLW
ACHLGPELGG QGYGQVRLAL LNEILGRSRW APSIFGCQAP DSGNAEILAH FGTPEQKARY
LEPLLEGDIA SCYSMTEPRG GADPTLFTVR AVRDGGDWVI NGEKWFSTNA RHASFFIVMA
VSNPDVDAYK GMSMFIVPAE TPGITIVRNP GVATEPPEQG SLGGVRHDHG YVRYTDVRVP
ADHLLGGEGD AFAIAQTRLG GGRVHHAMRT VALARHAFDL LCERAVSRQT RTGPLASLQM
TQEKVADSWI DIECFRLLVL RTAWLIDKHK DYRKVRKDIS AVKVMLPRVL HDVAQRALRI
HGSLGVSNEM PFVSMMVTAE ALGIADGPTE VHKVTLARQV LRQYTPVETL FPSGHLPTLR
EQAFAAFADR LEHEAAEL
|
|---|
| |