| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6709 |
|---|
| Symbol | |
|---|
| ID | 5675022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8149861 |
|---|
| End bp | 8150919 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641245557 |
|---|
| Product | transposase, IS4 family protein |
|---|
| Protein accession | YP_001510949 |
|---|
| Protein GI | 158318441 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.556081 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTTCAG TGTCGCCTAC CCGCGTTCCC GACGGTCGAC GGGCCCTGCT CGCGGGCCGG
GCCGTCGCGC GGGCCGGAGG GCTGCTCGGC GCACTGGGCG CGGTGCCCGG CCGGCGGCGG
GCGCGGGGGC GTCGCTACGG GCTGGCGTCG GTGCTGGGGC TGTGGTTCGC CGGGGTTCTG
GCAGGTCAGC AGACGTTCAC CGCGGTCTGG GAGTGGGCGG TCGACCTGCC GGCGGAGTTG
CTGGCCGGGT TCGGGCTGAC CCGGGGGATC CCGTCGGAGC GGACGACCCG ACGCCTGGTC
GAGGGCTGCG ACCCGGTCGC GCTGGACGAG GCGCTCTCGG GCTGGATCGC CCGTGCCGCC
ACGGTCGGGG ACCCGGGGCC GCGGGGGCTG GCCTTCGACG GGAAGACCCT CAAAGGCACC
AGGTCGTTCA CCGAGGCGGG CGCGATGAGC CAGGAGGCGG TCCTCGAGGC GGTCTGGCAC
GACACCGGGA TCACCGCCGG CCACCAGCGG GTCGTCGGCG GCGACGAGAT CGCCGCCCTC
GAGGCACTGG CCGGCCGGCT CGACCTGACC GACGTCCTGG TCACGACGGC CGAGAAGGGC
CACGGCCGGG TCGAGGTCCG TTCGTTGAAG GCGCTGACCG TCACCACCCC GAAACTCGTC
GGCTTCTGGG GCACCAAGCA GGTCATCGAA CTGCGCCGAC GGACCCGACG CAAGAAGACC
GTCACCGCGG CGCCGACCGT CTCCGAGGAG GTGTTCTACC TGGTCACCAG CCTGCCCGCC
GAACAGGCCC ACCCCCGCGA CCTCGCCGCC CGCGCCCGCG CCCGCGGCCA CTGGACCGTC
GAAGCCATCC ACCACGTCCG CGACCGCGTC CTCGACGAGG ACCGCCACAC CGCCCGCACC
GCCAACGCCC CACTCGCCTG GGCGATCGCC CGCGACACCG CCATCAGCGC GCTACGCCTC
ACAGGACACA GAAGCATCGC CAAAGCCCTG CGAACCACCG CCCGCCAGCC CGAACGCGTC
CTCCAGACCA TCGCCCTGAT CAGCGAAAAG GGACTTTGA
|
|---|
| Protein sequence | MPSVSPTRVP DGRRALLAGR AVARAGGLLG ALGAVPGRRR ARGRRYGLAS VLGLWFAGVL
AGQQTFTAVW EWAVDLPAEL LAGFGLTRGI PSERTTRRLV EGCDPVALDE ALSGWIARAA
TVGDPGPRGL AFDGKTLKGT RSFTEAGAMS QEAVLEAVWH DTGITAGHQR VVGGDEIAAL
EALAGRLDLT DVLVTTAEKG HGRVEVRSLK ALTVTTPKLV GFWGTKQVIE LRRRTRRKKT
VTAAPTVSEE VFYLVTSLPA EQAHPRDLAA RARARGHWTV EAIHHVRDRV LDEDRHTART
ANAPLAWAIA RDTAISALRL TGHRSIAKAL RTTARQPERV LQTIALISEK GL
|
|---|
| |