Gene Franean1_6584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6584 
Symbol 
ID5674899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp8012495 
End bp8014003 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content73% 
IMG OID641245435 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001510827 
Protein GI158318319 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAGC CGACCAGTCG CCGCAGGTTC GCCGTTCTCG CGATCTGCTG CATGAGTCTG 
CTGATCGTGG GGCTGGACGG CACCATCGTG AACGTGGCCC TGCCCGCACT GCGCCGGGAT
CTGGGTGCGT CGCCCGCGGG CCTGCAATGG ACGATCGACA GCTACACCCT CGTCCTGGCC
AGCCTGCTCA TGCTCGGTGG TTCCACCGGC GACCGGCTCG GCCGCCGTCG GATCTTCCAG
ACCGGACTGG CCCTGTTCAC CGCAGGCTCG CTGCTGTGCA GCCTCGCGCC CGGGCTCGGC
TGGCTGGTGG TCTTCCGAAT GGTGCAGGCC GTCGGCGGCT CGATGCTGAA CCCGGTTGCG
ATGTCCATCA TCACCAACAC GTTCACCGAC CCGCGGGAAC GGGCCCGCGC CATCGGTCTC
TGGGGCGCGG TGATCGGGAT CAGCATGGCA CTCGGCCCGG TGCTCGGCGG CATCCTCGTC
GAGACGGTGA GCTGGCGGGC GATCTTCTGG ATCAACATCC CGATCGGGCT CGCCGCGCTG
GTGCTCACGC ACCGCTTCGT CCCCGAGTCC CGCGCGCCGA GCCCACGCCG CCTGGACCCC
GTCGGACAGC TCCTTGTGAT CGCCGTCCTC GCGACCCTCA CCTACTCGAT TATCGAGGCG
CCCGCGGCAG GCTGGACGTC CGCCGAAACG CTCGTCCTGC TCGCGGTGGC GGTCGCCGCG
GCGGCGCTGC TGGTCGGCTA CGAGTCGCGG CGCACCGAGC CGCTGCTGGA CGTCCGCTTC
TTCCGCAGCG CGCCCTTCTC CGGCGCGACG GCGATCGCGG TGTGCGCGTT CGGCGCCCTC
GCCGGCTTCC TCTTCCTCAA CACGATCTAC CTGCAGGACG TCCGTGGCTA CTCGGCGCTG
CACGCCGGCC TGCTGACCCT GCCGATGGCG CTGGCCACCC TGGTGATCGC GCCCCTGTCC
GGCCGGGCGG TGGGCCGCTT CGGCCCGCGT CCGTCGCTGC TCGCCGCGGG TGTCGCCCTG
ACCGCCGGCA GCGCGGCGAT GACGGGCCTG TCCCCACAGA CCTCCGTCAC CACCCTGATG
GTCGCCTACG TCCTCTTCGG GACGGGCTTC GGCCTGGTGA ACGCGCCGAT CACCAACACG
GCGGTCTCCG GGATGCCGCT CGAGCAGGCC GGGGTCGCGG CGGCGGTCGC CTCGACGAGC
CGCCAGGTCG GCCAGTCGCT GGGCGTGGCC GTGATCGGCT CCGTCGCGGC AGCGACCGCG
ACGGTCGGGG CCGTCGACCC CACCAGCACG GCCGCCTGGT GGGCGGTGGT CGCGGCCTGC
GCCGCCGTCC TCGCCCTGGG GTTCGCGACG ACGGGCACCT GGGCCCGGCG CACCGCGGAC
CAGACCCGGT CCCGCCTCCT GACCACCCTC GCCCCCGGGC AGGCCGCCAC CCCGCAGGAG
GGGACCCAGC AGGCTGGGAA CCAGCAGGCC GCCCACCCGG TGACCGCCGA ACCGGAGCCC
AGCCCCTGA
 
Protein sequence
MAEPTSRRRF AVLAICCMSL LIVGLDGTIV NVALPALRRD LGASPAGLQW TIDSYTLVLA 
SLLMLGGSTG DRLGRRRIFQ TGLALFTAGS LLCSLAPGLG WLVVFRMVQA VGGSMLNPVA
MSIITNTFTD PRERARAIGL WGAVIGISMA LGPVLGGILV ETVSWRAIFW INIPIGLAAL
VLTHRFVPES RAPSPRRLDP VGQLLVIAVL ATLTYSIIEA PAAGWTSAET LVLLAVAVAA
AALLVGYESR RTEPLLDVRF FRSAPFSGAT AIAVCAFGAL AGFLFLNTIY LQDVRGYSAL
HAGLLTLPMA LATLVIAPLS GRAVGRFGPR PSLLAAGVAL TAGSAAMTGL SPQTSVTTLM
VAYVLFGTGF GLVNAPITNT AVSGMPLEQA GVAAAVASTS RQVGQSLGVA VIGSVAAATA
TVGAVDPTST AAWWAVVAAC AAVLALGFAT TGTWARRTAD QTRSRLLTTL APGQAATPQE
GTQQAGNQQA AHPVTAEPEP SP