Gene Franean1_6540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6540 
Symbol 
ID5674855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp7954269 
End bp7955207 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content74% 
IMG OID641245389 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001510783 
Protein GI158318275 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.216575 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAGG ACCACCGAGG GGCCAGGCCC CCGGGCCGCC GGAGCCTGCT TGCCGGGGCG 
GCGGGACTCG TCACCACGGT GGCCGCGGCG ACGGCCGTAC CCGCCGGCGC GGCCGCTGCG
GCGCCCACCC CTGCCCCGGC CCCCATACCG GCGCCGGCGC GTCGGTTCGC GGGGAAGGTC
GTCCTTGTCA CGGGAGCGAC CTCGGGCATC GGACGGGCGG CGGCCATCGC GTTCGCCCGG
GAGGGAGCGA GAGTCGGCTT CTGCGGCAGG CGGGAGGAGC TCGGCCGCCG TGTGGAGGAG
GAGATCCGCG CCGCCGGCGG AGAGGCCACC TACACGCGGG CCGACGTCCG CGATCCTGCC
CAGGTCGAGT CGTTCGTGGC CGGTGTCGCC GACCGGTACG GCCGGCTGGA CGTCGCGCTC
AACAACGCCG GAACCCAGAT TGTGAAGCCG CTGCACGAGA TGACCGTCGA GGAGTGGGAC
GACACCGCCC ACACCAACAC CCGCGGGGTC TTCCTCGCCA TCAAGTACGA GGTGCCACCG
ATGCGGGAGT CCGGCGGCGG CGTCATCCTC GTCACCGGCT CCGCGAACGA GTTCGCCAGC
AGGCCCGGAC TGGGCGCCTA CAGCGCGAGC AAGGGAGGCG TCACCGGCCT GGTACGCACC
GCGGCCCTGG ACTACGGACA GGACAACATC CGGGTCGCCG CGCTCTCTCC GGGCACCACC
GACACGGGGC TGGTCGACCG CCGCCGCCCC CCGAACATCA CCGACGAGCA GTGGGCCGCC
GGCAAGGCCC AGTACGGTGC GGACAACGTC GACGCGCTGC GCCGGATGGC CCGCCCGGAG
GAGATGGCCG CCGCCGCCCT CGCCCTGGCC TCGCCGGACA TGAGTTTCCT GACGGGCACC
TCGGTTCTCG TCGACGGGGG CATGCTCGCC GGCCTGTGA
 
Protein sequence
MTKDHRGARP PGRRSLLAGA AGLVTTVAAA TAVPAGAAAA APTPAPAPIP APARRFAGKV 
VLVTGATSGI GRAAAIAFAR EGARVGFCGR REELGRRVEE EIRAAGGEAT YTRADVRDPA
QVESFVAGVA DRYGRLDVAL NNAGTQIVKP LHEMTVEEWD DTAHTNTRGV FLAIKYEVPP
MRESGGGVIL VTGSANEFAS RPGLGAYSAS KGGVTGLVRT AALDYGQDNI RVAALSPGTT
DTGLVDRRRP PNITDEQWAA GKAQYGADNV DALRRMARPE EMAAAALALA SPDMSFLTGT
SVLVDGGMLA GL