| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6528 |
|---|
| Symbol | |
|---|
| ID | 5674843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7938319 |
|---|
| End bp | 7939497 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641245376 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_001510771 |
|---|
| Protein GI | 158318263 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.203343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGGG CAGCCCAGCC CGAACCCGAC AGCTCACCTC GCAGGCGTAC GGGAAGGAAC
GCAACGTTGT CTGCGCAAAG TGTGCAGCTT GATGCTGAGA GACGCCGGCA GGAAGGGCGC
GGTCGCCACC GTGCGCCGTC CGCCCCCACG GCGTCCAGCC GAGCCAGAGC CAGGGCCCGT
ACCGTCGCGG CCATCACCAC CGGAACCGTC GCGGTCTCCG GGGTGGCGCT CGCCGGGTGC
GCCCAGGATG TCAACTCGGA CGTCGCGCTG GACGACGGCA CGAACACCGC CCCGATGACG
CTCGCGACCC AGATCGGGTC CCGGCTGGCG GTCGACGGAG CCATCCAGGC CGCCACCGCT
ACCGGCGGCG GTTCGGGCAC CGTTCTCGAC GCCACCACGG ACATCTCCGC GCCGACTCTC
TCGTCGAAGA TCGACGTCGG CCTGCGCGTG ACGAACCCCG AGGTCACGGT CAACGCGGAC
GAGCCCGTCA ACATCGGCTT CTCGCTCTAC AACGAGGAGA CCCAGGCCCC GATCCCGGAC
CAGCTCATCA AGGTCCAGGT CAAGCTGCCG ACCGGGTGGG CGACCTTCCT GCACCTGACG
ACGGACGACC GCGGCTTCGC GTCGTACACC GCGAAGGTGC TCACCACCAC GAATGTCACG
GCGATCTTCG ACGGCACTGA CGCCCTCCAG TCGGCGCACT CGGAGAACGA CGCCACGCTG
CACGTCCGCC CGGCTCCGCC GCCGGTGCCC GCACAGGCCT CCCGCAGCGC GGACCGCACG
GGCGTGAACG TCAACACCCC GGTGGTCAGC GTCAACCTGC CGACCAACAC CCTCGGTGAG
AAGGCCGTCT ACCTGGCCTC GCTACAGGCC GGCAAGCCGT ACGTCTACGG CGCCGAGGGT
CCCAACGCCT TCGACTGCTC CGGTCTCGTG CAGTACATCT ATCGGCAGCT CGGCAAGAGC
CTGCCGCGTA CCACCGACCA GCAGTACGCG GCCACCACCC ATATCTCCCA GTACAACAAG
GCGCCCGGCG ACCTGATCTT CTTCGGGAGC CCCGGAAACA TCTACCACAT GGGCATCTAC
GCCGGCGACG GCAAGATGTG GGTCGCGCCC CGCACTGGTG ATGTCGTCAA GCTTCAGACG
ATCTACACGA CCTCGTACTT GGTCGGCCGC GTCACCTGA
|
|---|
| Protein sequence | MDRAAQPEPD SSPRRRTGRN ATLSAQSVQL DAERRRQEGR GRHRAPSAPT ASSRARARAR
TVAAITTGTV AVSGVALAGC AQDVNSDVAL DDGTNTAPMT LATQIGSRLA VDGAIQAATA
TGGGSGTVLD ATTDISAPTL SSKIDVGLRV TNPEVTVNAD EPVNIGFSLY NEETQAPIPD
QLIKVQVKLP TGWATFLHLT TDDRGFASYT AKVLTTTNVT AIFDGTDALQ SAHSENDATL
HVRPAPPPVP AQASRSADRT GVNVNTPVVS VNLPTNTLGE KAVYLASLQA GKPYVYGAEG
PNAFDCSGLV QYIYRQLGKS LPRTTDQQYA ATTHISQYNK APGDLIFFGS PGNIYHMGIY
AGDGKMWVAP RTGDVVKLQT IYTTSYLVGR VT
|
|---|
| |