| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6454 |
|---|
| Symbol | |
|---|
| ID | 5674769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7846666 |
|---|
| End bp | 7848783 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641245302 |
|---|
| Product | serine/threonine protein kinase |
|---|
| Protein accession | YP_001510697 |
|---|
| Protein GI | 158318189 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00864828 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGTCG GTCCGGATGG CGCACGGGTC GTAGCCGGTC GTTACCGGCT GGTGGCACGG
CTCGGAGCCG GTGCGATGGG AACCGTCTGG CGCGCCTTCG ACCAGGTCCT GGAGACCGAG
GCGGCGCTCA AGGAGATCGA GTTCGCCGGT GGCGTGCCCG ACTACGAGCG CGCCGAACGG
GTCGAGCGGG CGCTGCGCGA GGCGCGGCAC GCGGCCAAGC TGCGCGGCCA CCCGCATGTG
GTGACCATCC TGGACGTCGT CCTCGAGGAC GGCCTGCCGT GGATCGTGAT GGAGCTCGTC
CCGTCCAGGT CGCTGTTCGA GGTGGTGCGG GACGACGGGC CGATGCCGGT GCCCGAGGTC
GCCCGGATCG GCATCGCGAT GATCGACGCG CTGCTCGCCG CCCGCGCCCA GGGAATCGTG
CACCGGGACG TGAAACCGTC CAACGTTCTG ATCGGCACGG ACGGACGCGT GGTGCTCACC
GACTTCGGAA TCGCCACCGG CGACGGCGAT CCGACTCTCA CCGTGACCGG AGTACTCGGC
ACCCCGCTGT ACATGGCGCC CGAGCGGCTG AACAACGCTC CGGCCACCTT CGAGGCCGAC
ATGTTCAGTC TCGGGGGGAC GCTGTACTTC GCCGTCGAGG GCCGCCCGCC GTTCGAGCGG
GAGAGTTTCG GCGCGATGCT CGCCTCGGTG CTGCTGCACC CGCCGACGCC GATGCGGCTC
GCCGGTCCGC TGGCGGACGT CCTGACCGGA CTGCTGGAGA AGGAGCCGGA GCGACGGCTG
CCGGCCGGGG CCGCCCGGTC GATGCTCGAT ACACTGATCA TCAACGGGAT GGCCGCGGGC
GGCGGTAGTG GTGGCCCGTC CACCGGCAGT GTGGCCGCGA CCGGTACCGC CGTGCTCGGG
AACCGGGGCG GCCGTCCGGT GGTGCGGGCG GACGGGCTGG GCTGGCAGGC CCGCGCGGGC
GATGCGGGCG GCCAGGGCGG CGTCGGATCC TGGCGGGTGC CGGGCACGCT GGAGGGCGAG
CCGGAGTTCG GCAGCGGTCA GTTCCGACCG ACCGGCCCGG CCGGGGCAGT ACCCCGCGTC
GATCCCGAGG CCCCGACGAC CCTCGCCAGC GTTCGGCCCG TCCATCCCGG CGGACCCGCC
GCCCCCGAGA CCGACGGGCA CGACGAGGCG GCGGGCCATG GCGACGCGGA CGGGGCTGTC
GACGCGGGCG GGCCGGTCAG CGCGCCGCCG CCGCCCGCCG GGGTCTCCGT CGTCGAGCAG
GACGGCGCGC TGCTGATCAC CTGGGAGCCC TCGCCGGGCG CCGAGACCTA CCGGGTGATC
CGGGTGGTCC CGGATGCCTC GGCCGGCGGC GGGCGGCGCG AGCGCAGTCT CGCCAGCACC
ACCTCGACCG AGTGGTTCGA CGCCGGGGTA CCCAAGGGTG TCCAGGTGTG GCACGAGGTC
GTCGCGGTCG GACCGAGCGC CGGCGGCGGT GCCCGGTCGG CGCCGGCCCG GAGCCCCGCC
CGGGTGGTGC TGCCGCCGGT GACCGCGCTG CGCGCCGACA TGACGGACGA CGCCGTCGCG
CTGTCCTGGC GTCCCGTCCC CGGCCGCGAC GAGGTGATCA TCGAGCGGAC GCACGACGAG
ACGTCATCGA TGCGCGGGGC GATGCGACGG TACCGCGGCT TCGGCGGGGC CTTCGTCGAC
AGCGACGTGC AGACGGGCGC GGTCTACCGC TACCGCGTGT GGGTGGCAGC CGGCGAGGAG
TCGGACGGGC TGCGCCCGGC GGCCTGCGCC GAGGTCACCG CCCGCGTGAT CGCCAGGCCG
CGCGCCGTCG TCGACCTGGA GGCGCGGGAG ACGCTCGGTG GCACCGTGCT GCGCTGGACG
ACCGTGCCCG GATCGGTGGT CCGCGTGTAC GCCACCCAGG CTCCGGAGCA GGCGGGCCTG
GCCGGGACTG GCCCGTTCGG GCCGGCGGAC CGCGAGGTCG GCCTCGGCTC CCTGGAGGGC
CGGGCCCGCC TCGTCGGCGA GAGCCGGCGG GGCCGGCTGG TCGACCGGGA CGGCACCGGC
ACGGTGGTCT ACACCCCGGT GAGCATCGCG GAGGACCGGG CGGTGATCGG CGCCGCCGTC
ACCCACACCG CCCCGTGA
|
|---|
| Protein sequence | MAVGPDGARV VAGRYRLVAR LGAGAMGTVW RAFDQVLETE AALKEIEFAG GVPDYERAER
VERALREARH AAKLRGHPHV VTILDVVLED GLPWIVMELV PSRSLFEVVR DDGPMPVPEV
ARIGIAMIDA LLAARAQGIV HRDVKPSNVL IGTDGRVVLT DFGIATGDGD PTLTVTGVLG
TPLYMAPERL NNAPATFEAD MFSLGGTLYF AVEGRPPFER ESFGAMLASV LLHPPTPMRL
AGPLADVLTG LLEKEPERRL PAGAARSMLD TLIINGMAAG GGSGGPSTGS VAATGTAVLG
NRGGRPVVRA DGLGWQARAG DAGGQGGVGS WRVPGTLEGE PEFGSGQFRP TGPAGAVPRV
DPEAPTTLAS VRPVHPGGPA APETDGHDEA AGHGDADGAV DAGGPVSAPP PPAGVSVVEQ
DGALLITWEP SPGAETYRVI RVVPDASAGG GRRERSLAST TSTEWFDAGV PKGVQVWHEV
VAVGPSAGGG ARSAPARSPA RVVLPPVTAL RADMTDDAVA LSWRPVPGRD EVIIERTHDE
TSSMRGAMRR YRGFGGAFVD SDVQTGAVYR YRVWVAAGEE SDGLRPAACA EVTARVIARP
RAVVDLEARE TLGGTVLRWT TVPGSVVRVY ATQAPEQAGL AGTGPFGPAD REVGLGSLEG
RARLVGESRR GRLVDRDGTG TVVYTPVSIA EDRAVIGAAV THTAP
|
|---|
| |