| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6436 |
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| Symbol | |
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| ID | 5674751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 7821424 |
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| End bp | 7825668 |
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| Gene Length | 4245 bp |
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| Protein Length | 1414 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641245284 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001510679 |
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| Protein GI | 158318171 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.013222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGG GCGACCGGCG ACACCGGATG ACGCCCGGCG ACCGCGCTCG GCGGCGGGTC
GAGCGGCGGC GGGTCAAGCG TGAGCGCCGT TGGGCCAGGT GGTCGTTCGG CCGCGGCCGG
CTGGCCTGCT GGCCGCTGGT CAGCGGGCTG ATCGCGATCC TCGCGCTGAG CGGGGTGGCG
CTGGTCGGCG GCAGCCGCTG GCTGGCTGAC ATCGAACAGG ACCGGCTGGC GAACCGGGTG
AGTCTGATCA GCAACCTGGC CACCTGGGAG TCGACGGTCG ACGACCCGGC AGGCCTGCGG
GCCGTCGTCG AGCGGACCGC GTTCGACCCC CACGACCCGG CCCGCAACCA CCAGCTCGCC
GCCCAGTTCC AGATCACCCC CGGAGGCGAC ACCACACTGC TGGTCGCGCT GCTCGACCGC
GCCGGGACGC TCCTGTCCGT TCGGCCGGCT CAGGGTGCGG TGAGCGCCGG GGATCTCGGG
CCGGCCTGGT CGACGGCGTG GAGCGGCGGC AGCGCCGTCT CGCCGGTCTT CACGCTCAAC
GGGCAGGCGG CGCGGGCCAC CGTCGTCCCG GTCGGCGGCC CGCGGCCCTG GGCGGTCCTG
GTCAGCGTGT CCACCGAGGA GTCGAAGCGG CAGCTCGGCA CCGGCATGGG CACGCTCCTC
CGGTTACGCG GGCAGGGCGC CGTCTCCACC ATCGACGCGC GTGGCATCGC TGTGGTCTCA
ACCGACCCCT CGCTGCCCGG GACCCGCGTG CTCGACCCCG CCGAGCTCAG CGCGGCCTGG
CGCTCGACCA ACCGCACCCG GGTCTGGACG ACCGGCGGCG AAGACGGCTA CACCCACGTC
GCCGCCGCCC AGCCGGCGAC CGGGTACACG ACCTACCTGG TCCAGCCGAC CGCGCAGCTC
TACGCGGAAC TACGGGAGCA GCGGTCGCAC CGCAACATCA CCCTGTTGGT GGTGACGATG
GCCGCGGTGC TCTCGATCGC GGTCGTCGGG CTGCACGAGG AGACCCGCGC CCGGCGCCGG
CACGGGAAGC TGAGCTCGCT GCTGGCCGCC ACCCGCGACA TCGTCATGAC CGTCTCGGCC
GCCGGCCGGC TCGAGTACGT CAGCCCCGCC GCGGCGACCC GGCTCGGCCA CGATCCCGCG
GCGCTGCGCG GGCGGCCGCT GTCCGAGCTG ATGCGCGGTG GCGACGCGGA ACGGGTCGCC
GCGCTGCTCG ACGAGCCGCT GCCGGCGACC GTGATGAACG TCCGGCTGCT GTCCGCCGCC
GGGCACGAGC ACTGGTTCGA CGTGTCGGCC CGGCGCCTCG CCGACGAGAC GGGCTCGCCA
CGGGCGATCC TGACCTTCCA CTCGATCGAG CGGCGCAAGT CCCTGCTCGA CCAGCTCGGG
TTCCAGGCCG GGCACGACCT GCTCACCGGG CTGGCGAACC GGGCGACCTT CGACGAGCGG
CTCGCCGGCG CCCTCGGCCA CCAGCCGGCC GGCGGCGCGC TCGCCCTGCT GTACATCGAC
CTGGACCACT TCAAACCGAT CAACGACACC TACGGGCACG CGGCCGGCGA CCGGGTGCTG
ACCGTCGTGG CGAGCCGCCT CACCGGCACG GTCGGCGCCG GGATCGCGGC CGGGCCCGAC
GCCGGGGCCG GGGCCGGGGC CGGGAGCACC GTCAGCCGGT TCGGCGGCGA CGAGTTCGGC
ATCCTGCTGC CCGGGGCGGA CGAGACCGCC GCGGGCGCGA TCGCCGCCCG TGTCGTCGCC
GCGCTCGGCG AGCCGATCGA CCTGGACGAG ACCCGCGTGA CGGTCGCGGC CAGCGTCGGG
GTCGCCGTCG CCCGCGGGAC GTGCCGTCCC GAACAGCTGC TGCGGGCCGC CGACCAGGCG
ATGTACCAGG CGAAGGCGGC CGGCCGGGCC CGGTACTCGA TCGGCGTGGT GGCGGAGGCG
GAGCCCGACC CGTCCGAGGC GGCCGCGCCC ACTCCCCCGA TGACACCGGC GGCGTCCCAG
GCGCCCGGGA CGCCGGCCAC GGGGAGCCCG TCCGTCTCGC CCCCGCCCGC CGCGCGCCCG
TCCTCGCGGC GTCTGTCAGT CGCGCACCCG TCCGCCCGAC GCCTGTCGAT CCGGCGGCTG
TCAGTCCGGC GGCCGTCGCC GCGGCGGCCG TCCGTCCGGC GCCGAGGGGG TACTCGCCCG
CCCGCTCCGC TGCGGCACCG GCTCGCGGCG GCGATCCCGT CCGCGACCGT CGTCGTGGTG
CTGCTGGGGA CCGTGACCGC CGGGCTCGCG ATGGAGACCA CGGCGCGTGA CAGGGCTCAG
AAGCAGCGGA TCGACGCCGG CGTCGAGCTC GTCACCCACG TCGCCGAGTA CGCCCATGCC
CTGAGCGACC CCGGGCGCCT CACCGGGGTC ATCTCGGAGA TGCCCTGGCC GCTCGGGAAC
CCCGCCGCGC TGACCGAGGT GTTGCGGGTC ATGGGGACCT CAGCCGTTGC CGGCCCGGGC
TCGCTGCTGG CCGTCGTCGC TCCCGATGGC CGGCCGATGG CGACCGAGCC GCCCGGTACG
CCCGTGCCGA TACCCGTCGG CGACGATCTC TGGTTCGACG CCAGCCGCAA AGGGGCGCTC
ACCCCGATGA TCCTCGTCAA CGGCCGCTCC CGGATCTGCT CCATCGTGCC GATCCTGCGC
GGCGGGTCCG CGGTGGCGCA GCTACTGCTG TGCCCGACGA ACGTGCTGCC CGCCGCCCGG
ACGCTGCGCT CCATGAACGG CCTGTCCGGG GATCTCGGCC GGGGCGGCAT CTCCGTGCTC
GACGTGCACG GCCGGGCGGT GCTGTCCTGG GACGAGGCGC TGGTCGGCAG GAAGCTGGTC
GAACCGGCCG ACCTCGAGCA GGTCCGCGAC GGCACACCCG GCCTGGTGCG CTCGGCGAAC
CGGCCGGACA CGACCGCCGT CGCCACGGCG ATCCCGGGCG GCGGATACGT CCTGCTGGAC
CAGACCGCCG ACCTGTTCCA GCTGAGCCTG CTGGAGTACC GCTCGATCGG CGACGGGCTG
CTCTTCGGGA TCATCGGCGT CACCGTCATC GGGCTGGCCG TGGCCAACCG GCGCCGGGAG
CGCGCGGTGC GCCAGGACTT CGAGCAGCTC GACATGCTGC TGCACGGCGC GCACGACATC
GTCATCCTCC TCGACCGGAG CGGCCGGCTG GATTTCGTCA GCTCCGCGGC GGAACCGCTG
CTCGGCCGGG ACAGCCAGGA GATGCTCGGC CACGACCTGC TGCGATACGT GCACCCGGAG
GACCGGGCGG CGGTCCGAGA GTTCCTCGCC GGCCCGGCCG GCGAGGCGGC GGACGGCCGG
GCGCTGCAGG ACATCCGGCT CGAGGCGCGT GACGGCAGCC ACCGCTGGTT CGACATCGAG
GCGACGGCCT GCGCCCCGCG GCCGCCGGCC GCCCGCGCCC GGGGCCCGGT GCTGACCTGC
CGGGAGATCG GGGAACGGCG CGGCCTCACC GAGCAGCTGC GCCGGCGGGC CCGGCACGAC
CCGCTCACCG GGCTGCCCAA CCGGGCCGCG CTGGCCGAGC ACCTCGACGC GGTCGCGCGG
CGCAGGACAG CGTACGCGGT CCTGCTCGTC GACCTGGACG ATTTCAAGCC GGTCAACGAC
AGCTTCGGCC ACGAGGTGGG CGATCATGTG CTGCGGGTGA CCGCCACGCG CATCCGCCGG
GTCCTGACCG GCGGCGACAC TGACGGCGGG GGCGGCGCCA GCGGCGACAA CAGCCCGCGC
CAGCCTGATA CGGCGCCCGC TCCCGGCGGT GCCGCGGGCG CCGGGGAGCG GCCCCGTTTC
CGCCGCCGCC CGTCGTCCTG GTTCGGCGGC GACCTGGGTG GATCATGGAA CCTGCCGGAG
CAGGGTGAGG TCTTCCGCGT GGGCGGCGAC GAGTTCGTCG CGGTGCTGGC CGGCCCTGCC
ACCGCGCTCG CGGGCGGGCT GGACGTCGAG GCCGTGGCCC GGCAGACCGC CGACCAGATC
ACCGCGATCG TCCGGGAACC GATTCACGCG GGCGGGCGGC TGGTGACGGT GGGCGCCACG
GTGGGCGTCG CGCTGTCGCG GGGGGCGGCC GCTCCGGAGG CCGTCCTGCG CCTCGCGGAC
GCGGCGATGT ATCAGGCGAA GCGGTCCAGG CTTGACGGCC GCCCTCCGGG CGAGCCGCTG
CGCACCTCCC CGCCCGCCAG GCCGCTGCGC GCCCCCGGCA CCGAGCCAGC CCCCGGCACC
GAGGCCGCAA CGCCAGCGGG CACCGAGGCC GAGCACGCGT TGTGA
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| Protein sequence | MTMGDRRHRM TPGDRARRRV ERRRVKRERR WARWSFGRGR LACWPLVSGL IAILALSGVA
LVGGSRWLAD IEQDRLANRV SLISNLATWE STVDDPAGLR AVVERTAFDP HDPARNHQLA
AQFQITPGGD TTLLVALLDR AGTLLSVRPA QGAVSAGDLG PAWSTAWSGG SAVSPVFTLN
GQAARATVVP VGGPRPWAVL VSVSTEESKR QLGTGMGTLL RLRGQGAVST IDARGIAVVS
TDPSLPGTRV LDPAELSAAW RSTNRTRVWT TGGEDGYTHV AAAQPATGYT TYLVQPTAQL
YAELREQRSH RNITLLVVTM AAVLSIAVVG LHEETRARRR HGKLSSLLAA TRDIVMTVSA
AGRLEYVSPA AATRLGHDPA ALRGRPLSEL MRGGDAERVA ALLDEPLPAT VMNVRLLSAA
GHEHWFDVSA RRLADETGSP RAILTFHSIE RRKSLLDQLG FQAGHDLLTG LANRATFDER
LAGALGHQPA GGALALLYID LDHFKPINDT YGHAAGDRVL TVVASRLTGT VGAGIAAGPD
AGAGAGAGST VSRFGGDEFG ILLPGADETA AGAIAARVVA ALGEPIDLDE TRVTVAASVG
VAVARGTCRP EQLLRAADQA MYQAKAAGRA RYSIGVVAEA EPDPSEAAAP TPPMTPAASQ
APGTPATGSP SVSPPPAARP SSRRLSVAHP SARRLSIRRL SVRRPSPRRP SVRRRGGTRP
PAPLRHRLAA AIPSATVVVV LLGTVTAGLA METTARDRAQ KQRIDAGVEL VTHVAEYAHA
LSDPGRLTGV ISEMPWPLGN PAALTEVLRV MGTSAVAGPG SLLAVVAPDG RPMATEPPGT
PVPIPVGDDL WFDASRKGAL TPMILVNGRS RICSIVPILR GGSAVAQLLL CPTNVLPAAR
TLRSMNGLSG DLGRGGISVL DVHGRAVLSW DEALVGRKLV EPADLEQVRD GTPGLVRSAN
RPDTTAVATA IPGGGYVLLD QTADLFQLSL LEYRSIGDGL LFGIIGVTVI GLAVANRRRE
RAVRQDFEQL DMLLHGAHDI VILLDRSGRL DFVSSAAEPL LGRDSQEMLG HDLLRYVHPE
DRAAVREFLA GPAGEAADGR ALQDIRLEAR DGSHRWFDIE ATACAPRPPA ARARGPVLTC
REIGERRGLT EQLRRRARHD PLTGLPNRAA LAEHLDAVAR RRTAYAVLLV DLDDFKPVND
SFGHEVGDHV LRVTATRIRR VLTGGDTDGG GGASGDNSPR QPDTAPAPGG AAGAGERPRF
RRRPSSWFGG DLGGSWNLPE QGEVFRVGGD EFVAVLAGPA TALAGGLDVE AVARQTADQI
TAIVREPIHA GGRLVTVGAT VGVALSRGAA APEAVLRLAD AAMYQAKRSR LDGRPPGEPL
RTSPPARPLR APGTEPAPGT EAATPAGTEA EHAL
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