| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6402 |
|---|
| Symbol | |
|---|
| ID | 5675788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7770949 |
|---|
| End bp | 7772502 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641245250 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001510645 |
|---|
| Protein GI | 158318137 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.195294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTC TCCGAACGTT CCGGACGTTA TCCGTTCTTT TTCTGTGCGA GCAGTACCCG
CCCATCGTCT GGGACGGCGC GGGTACCTAT ACCGCCGCAC TCGCGGCGGC GCTGGTGGGG
CTCGGGCACA ACGTTCATGT TCTCTGTGCC CAGGGCCGCC AGTTCACCGA CACGGTGGAG
CACGGGGTGC ACGTGCACCG ACGTCCGCTG CTGCAGGTCC CGATCACCAG GGCGCTGGGC
GGGTTCGGCG CGCGGCTGCG CGGTCCGCTC CATCCGCGCG ACTCGCTGGC GCTGCGGGCG
AGCCTCGCGC TGTCCTACAG CACCTGGATG CGCCAGATCG GCCTGCGCCC CGACGTGATC
GAGACACAGG ACGGCGAGAC GCGCGGGCTG ATCGAGGCCC TGTGCCGCAC TCGTCCGCTG
GCGATCCACC TGCACTGCCC GACGATGCTC ACAGTCCGGA TGGCCGGACA GCCGCTGGGC
GTCCGCGGCC AGCTGGCGGA TCGGCTGGAC CGCGCGTCCG CGAGCCTCGC CGCCGTCGTC
ACATCCCCGT CGCAACTCCT CGTGGACGAG CTGCGGCGGG ACGGCTGGCT GGGCGACCGC
GATGTCGAGG TGATCCCGAA CCTCTTCGAC GCCGGCCCGT GGCGGGACAT CCCGGACGCG
CGCGGCACCG AGCCGACCAT CGCGGTGGTG GGCCGGCTCG AGCCCTACAA GGGCGTGGAC
GTCCTGCTCG AGGCGTCGGC GCGGCTGCGT GCCGCCGGCG TCGCCCACCG GCTGGCGGTC
GTCGGGCGCT CGTCGGGCGT GATCGACGGC GTGCCGTCAG GTGCCTGGCT GGCCCGCCGG
GCCCGTGAGC TGCGCCTCGA CGTCGAGTTC AGCGGGCATC TGGCGGGGCG TGAGGTCCGT
GACGTCTATC GCGGTGCCCG GGTGGTGGCC GTGCCCAGCC GTTTCGAGAG CTTCTCGATC
GTCGCGGCCG AGGCGATGGC GGCCGGGCGC CCGGTGGTCG TGACGAAGCG GACCGGGATC
GCCCCCTTCG TGCAACGGTG GGGCGCGGGA AGCGTGGTGG AGACCGGTGA CCCGGGCGCG
CTGGCCAGCG CGTTGGCTCC CTTCCTCCTC GACGCCGGAC GGGCGGTCGC CGTCGGGGAG
CGCGGGCGGC TGGGGGTGGC CGAGCTCGAC CCGCAGGCCA TCGCCCGTCG GAAGGAGGCG
GCCTACCTGC GGGGAATCGC CGAGTTCAAC GACCGGATCC GCGTCCGGGA CCGGTTCATC
GGCCAGAGCC GTCCCCGGAA CCGGAACCGG AACCGGAACC CGACCCGGGA TCACGATCGG
TGGCCGGGCC GTGCGGGGCG GCCGGGCCCG GAACAGGTGT GGGAGCACGA GAAGGGACGG
GACCAGGGCC GGGACCACGG CCACTTCCGC GACCCGGCGG CGGGGAGTGC GGCCGCCCCG
TGCCCCGAGC CCCGCCAGCT CGCCACGGAC GGTCGAAATC GAGGTGCCGT AGGCCGTCGG
CCGCCACATA GACCTCGTAC CGACTCTCCA AGGTCGCCAG CAGGGAGCCA GTGA
|
|---|
| Protein sequence | MGFLRTFRTL SVLFLCEQYP PIVWDGAGTY TAALAAALVG LGHNVHVLCA QGRQFTDTVE
HGVHVHRRPL LQVPITRALG GFGARLRGPL HPRDSLALRA SLALSYSTWM RQIGLRPDVI
ETQDGETRGL IEALCRTRPL AIHLHCPTML TVRMAGQPLG VRGQLADRLD RASASLAAVV
TSPSQLLVDE LRRDGWLGDR DVEVIPNLFD AGPWRDIPDA RGTEPTIAVV GRLEPYKGVD
VLLEASARLR AAGVAHRLAV VGRSSGVIDG VPSGAWLARR ARELRLDVEF SGHLAGREVR
DVYRGARVVA VPSRFESFSI VAAEAMAAGR PVVVTKRTGI APFVQRWGAG SVVETGDPGA
LASALAPFLL DAGRAVAVGE RGRLGVAELD PQAIARRKEA AYLRGIAEFN DRIRVRDRFI
GQSRPRNRNR NRNPTRDHDR WPGRAGRPGP EQVWEHEKGR DQGRDHGHFR DPAAGSAAAP
CPEPRQLATD GRNRGAVGRR PPHRPRTDSP RSPAGSQ
|
|---|
| |