Gene Franean1_6363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6363 
Symbol 
ID5674679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp7724606 
End bp7725283 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content75% 
IMG OID641245212 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001510607 
Protein GI158318099 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATCG TGCACGGACA GGACGGTGCG GCACCCGTGA CGCGCCGGCC GTCAGCGGCC 
GGCACCGGCG GCGGCGCACC TACACCTGCC CGCACGCCGG CTGCGGCCCG GCAGCCGCTT
TCGCGGCGAG AGGTCGTCGA GCTGCACGGC CATCTGGTCG CCGGGAATCC CACCGCGCTC
GCCGTCGTCC ACGAGAGGTA CGCCCGCTAC CTGCTTGCCG TCGCCACGCG GGTGACCGGT
GACGCCGACG CGGCCCGGGA CGTCCTCCAG GAGGTGCTGG TCGCGTTCTG GCAGCATCCG
CTCCGGTTCG ACCCGGACCG CGGGGAGCTG CGCACCTGGC TCGCGGTACT CGCCCATCGG
CGCGCCGTCG ACTGGGTCCG CCGGGAGATC GCCCGGCGCC CTACCGACCT GGTCGCGCGG
GCCCTCGCCG AGCAGTCGGA CGGCCCGGCG GCCGACCGCG ACTTCCTCGC GCGGGAGGAC
GCCGACGCCG TGCGGGCCGC CGTCGCCGCG TTACCCGTGA AGCTGCGCGA GGTGGTGGAG
TTGGCGTACT ACAGGGAGTT GACCTACCGT GAGGTGGCCA TTCGGCTCGC CATCCCGGAG
GGGACGGCAA AGTCGCGCAT GCGAGCGGCC CTGTCAGCCC TCGCGCTGGC CCTCACCCGC
CTGGGAGCCG CCCCGTGA
 
Protein sequence
MPIVHGQDGA APVTRRPSAA GTGGGAPTPA RTPAAARQPL SRREVVELHG HLVAGNPTAL 
AVVHERYARY LLAVATRVTG DADAARDVLQ EVLVAFWQHP LRFDPDRGEL RTWLAVLAHR
RAVDWVRREI ARRPTDLVAR ALAEQSDGPA ADRDFLARED ADAVRAAVAA LPVKLREVVE
LAYYRELTYR EVAIRLAIPE GTAKSRMRAA LSALALALTR LGAAP