| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6228 |
|---|
| Symbol | |
|---|
| ID | 5674547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7565598 |
|---|
| End bp | 7566296 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641245080 |
|---|
| Product | secreted protein |
|---|
| Protein accession | YP_001510476 |
|---|
| Protein GI | 158317968 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3319] Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAGC CCACTGTCGT CCTCGTCCAC GGCGCCTTCG CCGACGCGTC CAGCTTCGCC
AGGGTGGTTC CCGAGCTGCT CGCCGACGGC CTCGCGGTGG TGGCACCGGC GATCCCGAAC
CGCTCGCTCG TCGGCGACGC CGAGTACCTT GGGCCGGTCC TCGCGGCGAT CGACGGTCCC
GTCGTCCTCG TCGGCCACTC GTACGGCTGC GCGGTGGCCA CCGTGGCCGG TGTCGCCGAG
AACGTGAAGG CCCTGGTCTA TCTCGCCGGC TTCGTCCTCG AGGAGGGCGA GGCCCTGGGC
GAGCTCCAGG GTCGGTTCCC CGACTCCGAC CTGGGCTCAG CGCTGGTCAC CACACCGTTC
CCGGGCGGCG TAGATCTCTC GGTCGATATT CAGAAGTTCC CGGCGGTCTT TGCCCACGAC
GTCGACCCGG CCGTCACCGC GGTGCTCGCC GTGTCGCAGC GGCCGTTGTC CGCGGCGGTG
TTCGGCGAGA AGGCACCCGC CGCGGCGTGG CGGACCAGGC CGACATGGGG CATCGTCGCC
ACGTCGGATC ACGCCATCAA CCCGGAGGTC CAGCGCTTCG GCTACCAGCG CGCGGGGGTC
GAAACGGTGG AGGTGGACTC GTCGCACCTG GTGATGTTCT CCCAGCCGAC CGTGGTAGCC
GATCTGATCA GGACGGTCGT CAAGTCGGTG CCCGCCTGA
|
|---|
| Protein sequence | MSQPTVVLVH GAFADASSFA RVVPELLADG LAVVAPAIPN RSLVGDAEYL GPVLAAIDGP
VVLVGHSYGC AVATVAGVAE NVKALVYLAG FVLEEGEALG ELQGRFPDSD LGSALVTTPF
PGGVDLSVDI QKFPAVFAHD VDPAVTAVLA VSQRPLSAAV FGEKAPAAAW RTRPTWGIVA
TSDHAINPEV QRFGYQRAGV ETVEVDSSHL VMFSQPTVVA DLIRTVVKSV PA
|
|---|
| |