Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_6225 |
Symbol | |
ID | 5674544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 7560592 |
End bp | 7562733 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641245077 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001510473 |
Protein GI | 158317965 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGCGGAT CTAGCCGGCA CGGCCGCGAG AACTCGGCCG CCGCTCTGGA TCCACCCGAC GGAACTGACC CGGGCGCTCC GCCCGGGTCC GAGACCGGGC TGTTCACCTC GCAGCTGTTC GAGCTGGCCC CGATCGGCCT GCTGATCACT GACCGGAAGC TGCGGGTACG CCAGATGAAC CGCGCGATGC GAGCCATCAA TGGGTTGTCC GCCAGCGACA TCGGGCAACG ACCGTTGAGC GAGTTGCTCC CCGACGTCCA CCCCGGGGCC TGGGAGGTGA TCCGTCAGGT CCTTGCCACC GGCGAGCCCA TCCTCAACGT GGAGATCACC GGTTCCACTC CTGCCCCCTG GCCAGGGCAG CGGACTTGGC GGGTGTCCCA CTATCCGCTC CGCGGCGGGG ACGGGTCCGT CGCAGCGGTG GGCGTCGCCC TGGTGGACGT GACCGACCAG CGGCGGGCGG AGGCCGCGCG GGACAAGGTG GAACAGCGGT TGCGGCTGCT GGGCCGGGCC AGTGGGTTGA TCGGAGCGTC ACTGGACCTG ACGGCGACGC TGGAGGGGAT GGTCGAGCTC ATCGTTCCCG AGTTCGCCGA CAACTGCGAC CTGTACCTCA CCGAGGAGCC GCTGGACGCG ACCGCCCCGC CGGCCCGGCT GCCGCTGCGT CTCACCGTCG CCGGGAACAC GCCGTTGCTG CCGCCGCCGG AGGCCCACCA GCTCCTGCCT TCCGCCATCA CCTATGTCGA CCAGGACAAC CCAGCGCACC GTTCGCTCGC CACCCGCCGT CCGGTCCTCT TCGACGTCGA CGAGCGGGTG ATCGCCAGCG TCGATCATCC CCAGCGGGAT GAGCACTTCG AATACATCGC CGTTCGCACC GCGATCACTG TCCCGCTGCT GGTCGGCAAC GAATACCACG GTTCGGTGTA CCTCGGTCTC GGGCAGTCCG GGCGGACCTA CATCGAGTAC GACGTGCAGA CCGCGGCGGA GCTCGGCAGC CGGATCGCCA ATGCGGTCGC CAACGCTCGC GCCTTCGACC GCCAGCGCAC GGCCGCAATC ACCCTGCAAC GCGGGCTGCT GCCCGGCGGG TTGCCGGCTG TCGAGGGTCT GGACATCGAA TGGCGCTACG AGCCCGGCAC GGCAGGAACC GAGGTCGGCG GCGACTGGTT CGACATCGTG CCGCTGTCGG CCGGCCGGGT CGCCCTCGTC ATCGGCGACG TGATGGGCCG CGGTCTGGCC GCCGCCGCCG TGATGGGCCA GGTCCGCGCC GCGGTCCGTG CCTTCGCCGC CCTCGACCTC CCGGCAGCGG ACGTCCTGAC GCACCTCGAC AGCCTGGTGC AGAATATCGG TGCCGGGCCG GACGGTGCCC TCGTCAGCTG CGTCTACGCA ATCTTCGAGC CGGCAACCGC CAGCATCACC GTCGCCAACG CGGGTCACCT CCCGCCCGCC CTCGTCGATG CGTACACAGA CGCTCGACTG CTGGAGGAGC CGGAAGGAAT CATCCTCGGC ATTGGCGGCC CACCGTGCAC CGAAGTTCGG TACCCGTTCC CGGCAGGCAG CACCCTCGCC CTCTACACCG ACGGACTCAT CGAATCCCCG AAGATTGACA TCGGCCAGGG TGTCCGCCAG CTGCAGGCGG CCCTCGTCGC CACCGGCAGC TTGCCCGCCA CGGCCGAGCG GCTGCTCACC CTCATCGACC GCAGCGGCGG TTACGACGAC GACGTCGCCC TCCTCCTCGT CCGCGCCACC GCACGCGCCA CCACCTGGAC AACCACCGTG GAGCCCGATC CGCGGGCCGC CAAAGCCGCC CGCGACACCA CCGTCACCGC GTTGCGGCAG TGGGAGCTCA CCGACAGCGT CGACCTTGTG GAGCTCCTCG TCAGCGAGCT CGTCACGAAC GCCATCCGGT ACGCGAAGAC CCCCAGCGAC CTGACGCTAC GCCGCGGTCG CCACGCCCTC TACGTCGAAA TCGCCGATGG CGACAGCCGG GTGCCGCGCC TGCTGAACCC TTCCGCCGAT GACGAGGGCG GTCGCGGGCT TCAGCTTGTC GCCCAACTCG CCACCCAGTG GGGAGCTCGT CCCACCCGCA CCGGGAAGAC AGTCTGGTTC GAACTCGACC TGACCGGCGC GGATATGAAA CGGTCAGAAT AA
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Protein sequence | MGGSSRHGRE NSAAALDPPD GTDPGAPPGS ETGLFTSQLF ELAPIGLLIT DRKLRVRQMN RAMRAINGLS ASDIGQRPLS ELLPDVHPGA WEVIRQVLAT GEPILNVEIT GSTPAPWPGQ RTWRVSHYPL RGGDGSVAAV GVALVDVTDQ RRAEAARDKV EQRLRLLGRA SGLIGASLDL TATLEGMVEL IVPEFADNCD LYLTEEPLDA TAPPARLPLR LTVAGNTPLL PPPEAHQLLP SAITYVDQDN PAHRSLATRR PVLFDVDERV IASVDHPQRD EHFEYIAVRT AITVPLLVGN EYHGSVYLGL GQSGRTYIEY DVQTAAELGS RIANAVANAR AFDRQRTAAI TLQRGLLPGG LPAVEGLDIE WRYEPGTAGT EVGGDWFDIV PLSAGRVALV IGDVMGRGLA AAAVMGQVRA AVRAFAALDL PAADVLTHLD SLVQNIGAGP DGALVSCVYA IFEPATASIT VANAGHLPPA LVDAYTDARL LEEPEGIILG IGGPPCTEVR YPFPAGSTLA LYTDGLIESP KIDIGQGVRQ LQAALVATGS LPATAERLLT LIDRSGGYDD DVALLLVRAT ARATTWTTTV EPDPRAAKAA RDTTVTALRQ WELTDSVDLV ELLVSELVTN AIRYAKTPSD LTLRRGRHAL YVEIADGDSR VPRLLNPSAD DEGGRGLQLV AQLATQWGAR PTRTGKTVWF ELDLTGADMK RSE
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