Gene Franean1_6068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6068 
Symbol 
ID5675778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp7386717 
End bp7387916 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content72% 
IMG OID641244919 
Productglycoside hydrolase family protein 
Protein accessionYP_001510318 
Protein GI158317810 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.646816 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCGG TGCCCGGGCC GGGGACGTCC GAGCCCGTCC TGTTCACGGA GCCGTCCCCC 
GCCTGGCCCA AGGGCATCGA CATCGCATCG TGGCAGCACC CCGGGTCGGC GCCGATCGAC
TGGAACGCGG TCAAGGGCGC CGGCATGACC TTCGCAATCG TGAAGGCCAC CGAAGGAACC
AATTACACGA ATCCGTTCTT CGTCGGCGAC CGGGACGCGG CCGGCAAGGC GGGCCTCGCC
GTCGGCGCCT ACCACTACGC CCGCCCGGCG GCCCCGATCT CGACCGCCGT CGACCAGGCC
CGGCACTTCC TGGCTGTGAC CGGCCTCACG CGCACAGCCG GCCACCTGGC TCCGGTCCTG
GACCTGGAGA CCACCGGCGG GCTCGATCCG GCGGCCCTCG CGGCCTGGAC CCGGGCCTTC
CTGGAGGAGA TCGAGTCCCA GACCGGCCGG GCGCCCATCC TGTACACGTA CCGGTCGTTC
TGGACGGACA GCATGGCCGA CACGAAGGAG TTCGCCCGGT ACCCGTTCTG GTTCGCCATC
TACAACAACG AGTCCACCCC GGGATGGCTG CCGGGCGGCT GGCCCGGCTG GGCGATGTGG
CAGTACACGT CCTCTGGCGT GGTCCCCGGG ATCATCGGGA GCGTCGACAT GAACGTCGTG
TGCTGCTCCG CCCCCGCGCT GACCGGGCTC GCCGACGGCA CCCTCTCCGA GATCGACAAG
CGGTACGCGG CGGCCGGGCT GCTGCAGCTC GCCCTCGGGG CGCCCACCGG AGCGGAGGTC
GTCGCGGGCG GCGGCGGCCG CTGGCGCCCC TTCACGAACG GGCTGATCTA CTGGTCCGTC
GCGACGGGAC CGCGGGTGCT GCACGGCGAG ATCGCGAAGA AGTACCTGGG CCTCGGCGGG
ACCAACAGCT TCCTCGGACG TCCGCTCGGC GACGTCGAGT GGGCCGCCGC GCCCGGCGCC
CACCAGGCGA TCTTCCAGGG CGGCTGGATC TACTGGCACC CGACGACCGG GGCGCACGAG
GTGCACGGCC TGATCCTGCG CCGCTACCTG GAACTGGGCG GCTCGACGTC CAGCCTGGGT
CTTCCGATCA CGGACGAGTA CTCGGTGCCG GGCGGCCGGG AAAGTGCCTT CCAGTTCGGC
AAGCTGCGCT GGACGGCCGC GACGAACGCG GTGACCCTGC TGCCCGCGGC GGCGCCCTGA
 
Protein sequence
MTPVPGPGTS EPVLFTEPSP AWPKGIDIAS WQHPGSAPID WNAVKGAGMT FAIVKATEGT 
NYTNPFFVGD RDAAGKAGLA VGAYHYARPA APISTAVDQA RHFLAVTGLT RTAGHLAPVL
DLETTGGLDP AALAAWTRAF LEEIESQTGR APILYTYRSF WTDSMADTKE FARYPFWFAI
YNNESTPGWL PGGWPGWAMW QYTSSGVVPG IIGSVDMNVV CCSAPALTGL ADGTLSEIDK
RYAAAGLLQL ALGAPTGAEV VAGGGGRWRP FTNGLIYWSV ATGPRVLHGE IAKKYLGLGG
TNSFLGRPLG DVEWAAAPGA HQAIFQGGWI YWHPTTGAHE VHGLILRRYL ELGGSTSSLG
LPITDEYSVP GGRESAFQFG KLRWTAATNA VTLLPAAAP