Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_6068 |
Symbol | |
ID | 5675778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 7386717 |
End bp | 7387916 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641244919 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001510318 |
Protein GI | 158317810 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.646816 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCGG TGCCCGGGCC GGGGACGTCC GAGCCCGTCC TGTTCACGGA GCCGTCCCCC GCCTGGCCCA AGGGCATCGA CATCGCATCG TGGCAGCACC CCGGGTCGGC GCCGATCGAC TGGAACGCGG TCAAGGGCGC CGGCATGACC TTCGCAATCG TGAAGGCCAC CGAAGGAACC AATTACACGA ATCCGTTCTT CGTCGGCGAC CGGGACGCGG CCGGCAAGGC GGGCCTCGCC GTCGGCGCCT ACCACTACGC CCGCCCGGCG GCCCCGATCT CGACCGCCGT CGACCAGGCC CGGCACTTCC TGGCTGTGAC CGGCCTCACG CGCACAGCCG GCCACCTGGC TCCGGTCCTG GACCTGGAGA CCACCGGCGG GCTCGATCCG GCGGCCCTCG CGGCCTGGAC CCGGGCCTTC CTGGAGGAGA TCGAGTCCCA GACCGGCCGG GCGCCCATCC TGTACACGTA CCGGTCGTTC TGGACGGACA GCATGGCCGA CACGAAGGAG TTCGCCCGGT ACCCGTTCTG GTTCGCCATC TACAACAACG AGTCCACCCC GGGATGGCTG CCGGGCGGCT GGCCCGGCTG GGCGATGTGG CAGTACACGT CCTCTGGCGT GGTCCCCGGG ATCATCGGGA GCGTCGACAT GAACGTCGTG TGCTGCTCCG CCCCCGCGCT GACCGGGCTC GCCGACGGCA CCCTCTCCGA GATCGACAAG CGGTACGCGG CGGCCGGGCT GCTGCAGCTC GCCCTCGGGG CGCCCACCGG AGCGGAGGTC GTCGCGGGCG GCGGCGGCCG CTGGCGCCCC TTCACGAACG GGCTGATCTA CTGGTCCGTC GCGACGGGAC CGCGGGTGCT GCACGGCGAG ATCGCGAAGA AGTACCTGGG CCTCGGCGGG ACCAACAGCT TCCTCGGACG TCCGCTCGGC GACGTCGAGT GGGCCGCCGC GCCCGGCGCC CACCAGGCGA TCTTCCAGGG CGGCTGGATC TACTGGCACC CGACGACCGG GGCGCACGAG GTGCACGGCC TGATCCTGCG CCGCTACCTG GAACTGGGCG GCTCGACGTC CAGCCTGGGT CTTCCGATCA CGGACGAGTA CTCGGTGCCG GGCGGCCGGG AAAGTGCCTT CCAGTTCGGC AAGCTGCGCT GGACGGCCGC GACGAACGCG GTGACCCTGC TGCCCGCGGC GGCGCCCTGA
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Protein sequence | MTPVPGPGTS EPVLFTEPSP AWPKGIDIAS WQHPGSAPID WNAVKGAGMT FAIVKATEGT NYTNPFFVGD RDAAGKAGLA VGAYHYARPA APISTAVDQA RHFLAVTGLT RTAGHLAPVL DLETTGGLDP AALAAWTRAF LEEIESQTGR APILYTYRSF WTDSMADTKE FARYPFWFAI YNNESTPGWL PGGWPGWAMW QYTSSGVVPG IIGSVDMNVV CCSAPALTGL ADGTLSEIDK RYAAAGLLQL ALGAPTGAEV VAGGGGRWRP FTNGLIYWSV ATGPRVLHGE IAKKYLGLGG TNSFLGRPLG DVEWAAAPGA HQAIFQGGWI YWHPTTGAHE VHGLILRRYL ELGGSTSSLG LPITDEYSVP GGRESAFQFG KLRWTAATNA VTLLPAAAP
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