| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6056 |
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| Symbol | |
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| ID | 5674377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 7368859 |
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| End bp | 7372749 |
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| Gene Length | 3891 bp |
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| Protein Length | 1296 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641244904 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001510306 |
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| Protein GI | 158317798 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.376172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGGACG TCAACTTCTT CGACGAGCTG CGCATCGGCC TGGCCACCGC GGACGACATC
CGCCAGTGGT CGTTCGGTGA GGTCAAGAAG CCGGAGACGA TCAACTACCG CACCCTCAAG
CCGGAAAAGG ACGGGCTCTT CTGCGAGAAG ATCTTCGGTC CGACCCGGGA CTGGGAGTGC
TACTGCGGGA AGTACAAGCG GGTCCGGTTC AAGGGCATCA TCTGTGAGCG CTGTGGCGTC
GAGGTCACGC GCGCCAAGGT GCGCCGCGAG CGGATGGGCC ACATCGAGCT CGCCGCCCCC
GTCACCCACA TCTGGTACTT CAAGGGCGTG CCGAGCCGTC TCGGCTACCT GCTCGATCTG
GCGCCGAAGG ACCTCGAGAA GGTCATCTAC TTCGCCGCCT ACATGATCAC AAAGGTCGAC
ATCGACTCCC GGCACCGCGA CCTGCCGACC CTCGAGGCCC GCATCGGTGT CGAGAAGCAG
CAGCTCGAGG ACAAGAAGAA CGCCGACGTC GAGACCCGCC AGCGCAAGCT GGAGGAGGAC
CTCGCGCAGC TCGAGGCCGA AGGCGCCAAG GGCGACGCCC GCCGCAAGGT GCGCGAGTCG
GCCGAGCGCG AGATGCGCCA GATCCGTGAC CGCTCCCAGC GCAAGATCGA CGACCTCGAC
CGGGTCTTCG ATCGGTTCAA GAACATGAAG GTCCAGGACC TCGAGCCGGA TGAGCTGCTC
TTCCGCGAGC TGCGCGACCG GTTCGGCCAG TACTTCGAGG GCGGCATGGG CGCCGAGGCG
CTGCAGCACC GGCTCGCCGA CTTCGATCTG GCCGCCGAGG CGGAGTCGCT GCGCGAGACC
ATCCGCAGCG GCAAGGGGCA GAAGAAGGCC CGCGCGCTCA AGCGGCTCAA GGTCGTGTCG
GCGTTCCTGA ACACCCGCAA CTCCCCGATG GGGATGGTGC TCGACTGCGT TCCGGTGATC
CCGCCGGACC TGCGGCCGAT GGTCCAGCTC GACGGTGGCC GGTTCGCCAC CTCCGACCTG
AACGACCTGT ACCGCCGGGT GATCAACCGG AACAACCGGC TCAAGCGGCT GCTCGACCTC
GGCGCGCCCG AGATCATCGT CAACAACGAG AAGCGGATGC TGCAGGAGGC CGTCGACGCG
TTGTTCGACA ACGGCCGCCG CGGCCGGCCC GTCACCGGGC CCGGCAACCG TCCGCTCAAG
TCGCTGTCCG ACATGCTCAA GGGCAAGCAG GGCCGGTTCC GCCAGAACCT GCTCGGCAAG
CGCGTCGACT ACTCGGGCCG TTCGGTCATC GTGGTCGGCC CGCAGCTCAA GCTGCACCAG
TGCGGCCTGC CCAAGCAGAT GGCGCTCGAG CTGTTCAAGC CGTTCGTGAT GAAGCGCCTG
GTCGACCTCA ACCACGCGCA GAACATCAAG TCGGCCAAGC GCATGGTAGA GCGGGCCCGC
CCGGTCGTGT GGGACGTCCT CGAAGAGGTC ATCACCGAGC ACCCCGTGCT GCTCAACCGG
GCGCCGACCC TGCACCGCCT CGGCATCCAG GCCTTCGAGC CGCAGCTGGT CGAGGGCAAG
GCCATCCAGA TCCACCCGCT GGTCTGCACC GCGTTCAACG CGGACTTCGA CGGCGACCAG
ATGGCGGTGC ACCTGCCGCT GTCCGCCGAG GCGCAGGCCG AGGCCCGGAT CCTGATGCTG
TCGAGCAACA ACATCCTGTC GCCGGCGTCG GGCCGTCCGC TGGCCATGCC CAGCCTCGAC
ATGGTCACCG GGGTGTTCCA CCTGTCCCGG GTGTCCGAGG GTGCGATCGG CGAGGGCCGG
TTCTTCTCCA GTGTCGCCGA GGCCCAGATG GCCTTCGACG CGCGGGAGAT CCACCTGCAG
GCCCGCATCC AGGTGCGGCT GCGGGAGAGC ACGCCCCCCG CCGAGTGGGC GCCGCCCGCC
GACTGGCTGC CGGGTGACCC GTTCACCCTG GAGACCACGT TCGGGCGCTG CCTGCTCAAC
GAGGCGCTGC CGGAGGGCTA CCCCTTCATC AACGCCCAGC TGAACAAGAA GGCGCAGGCG
GCGATCGTCA ACGACCTCGC CGAGCGGTAC CCGAAGATCC AGGTCGCGGC GACGCTGGAC
GCCCTCAAGA GCGCCGGTTT CTACTGGGCC ACCCGGTCCG GTGTGACGGT CGCGATCGAG
GACGTCGTGG CTCCGCCGAA CAAGGCCCAG ATCCTCGACG AGTACGAGCA GCGGGCCGAG
CGGGTCGAGA AGCAGTTCGG CCGCGGTTTC CTCTCCGACG AGGAGCGCCG CAGCGAGCTG
GTGCAGATCT GGACCGAGGC GACGAACAAG ATCGCCGAGG CCATGGAGGC GAACTTCCCG
GAGACCAACC CGGTCTACAC GCTGGTCAAC TCCGGGGCCG CCGGAAACAT GATGCAGATC
CGGCAGCTCG CCGGCATGCG CGGACTGGTC TCCAACCCCA AGGGTGAGAT CATCCCGCGG
CCGATCAAGG CGAACTTCCG CGAGGGCCTC ACCGTCGTCG AGTACTTCAT CTCCACGCAC
GGTGCCCGTA AGGGTCTCGC CGACACCGCC CTGCGGACCG CCGACTCGGG CTACCTGACC
CGTCGTCTGG TGGACGTCAG CCAGGACGTC ATCGTCCGCG AGGAGGACTG CGGCACCGAG
CGCGGCATCC TGACCCGGAT CGCCCGCAAG GGACCGGACG GGGTGCTGGT GCGCGACCGC
TACGCGGAGA CCTCCGCGTA CGCCCGCTCG CTCGCCTCCG ACGCCGTGGA CGCCCAGGGT
GAGGTCGTCG TCCCGGCCGG CGCCGACGCC GGCGACGTGG TCATCGGCCA GATCATCGAG
GCCGGGATCG AGTCGGTGCG GGTGCGCTCG GCGCTCACCT GCGAGTCGCG GATGGGTGTC
TGCGCGCACT GCTACGGCCG CTCGCTGGCC ACCGGCAAGC TGGTGGACGT CGGTGAGGCC
GTCGGCATCG TCGCCGCCCA GTCCATCGGT GAGCCGGGAA CCCAGCTCAC GATGCGTACC
TTCCACAGCG GTGGCGTCGC CGGTGACGAC ATCACCCAGG GTCTGCCGCG TGTCGTCGAG
CTGTTCGAGG CCCGTAGCCC CAAGGGCAAG GCCCCGATCA GCGAGGTGAC CGGCCGGGTC
AAGATCGAGG AGACGGAGAA GACCTTCAAG GTCGTCATCG TCCCCGACGA CGGCAGCGAG
GAGATCGCCT ACCCGGTCTC CCGCCGCTCC CGGCTGCGGG TCCGCGAGGG CGAGCGGGTC
GAGGTCGGCG CCCAGCTGAT CGACGGCGCC GTCGACCCGC ACGAGGTGCT GCGCATCCTC
GGCCCGCGCC AGGTCCAGCT CCACCTGGTC GACCAGGTCC AGGAGGTGTA CCGGTCGCAG
GGTGTGTCGA TCCACGACAA GCACATCGAG ATCATCATCC GCCAGATGCT CAAGCGGGTG
AACGTGCTCG AGTCGGGGGA GACCACACTG CTGCCGGGTG AGCTCGTCGA GCGCGCCCGC
TTCGAGGGCG AGAACCGGCG CGTGGTGGAG ATCGGCGGCC AGCCGGCCTC GGCCCGCCCG
GTGCTCATGG GCATCACCAA GGCCTCGCTG GCCACCGAGT CGTGGCTGTC GGCGGCGTCC
TTCCAGGAGA CCACCCGGGT GCTCACCGAC GCGGCGATCA ACGCCCGCTC GGACTCGCTG
GTCGGCCTCA AGGAGAACGT CATCATCGGA AAGCTCATCC CGGCGGGTAC CGGCATCTCC
CGGTACCGCA ACATCCGGGT GGAGCCGACC GACGAGGCGC GCGCGGCGAT GTACTCGGTC
AGCGGCTACG AGGACGGCGC CTCGGTCGAG TACGGCGCCT TCGGTGCCGG ATCCGGCCAG
GCCGTCCCGC TGGACGAGTT CGACTACCGC AGCTCGGGCG ACTACCGCTG A
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| Protein sequence | MLDVNFFDEL RIGLATADDI RQWSFGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC
YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDL
APKDLEKVIY FAAYMITKVD IDSRHRDLPT LEARIGVEKQ QLEDKKNADV ETRQRKLEED
LAQLEAEGAK GDARRKVRES AEREMRQIRD RSQRKIDDLD RVFDRFKNMK VQDLEPDELL
FRELRDRFGQ YFEGGMGAEA LQHRLADFDL AAEAESLRET IRSGKGQKKA RALKRLKVVS
AFLNTRNSPM GMVLDCVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLLDL
GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK SLSDMLKGKQ GRFRQNLLGK
RVDYSGRSVI VVGPQLKLHQ CGLPKQMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERAR
PVVWDVLEEV ITEHPVLLNR APTLHRLGIQ AFEPQLVEGK AIQIHPLVCT AFNADFDGDQ
MAVHLPLSAE AQAEARILML SSNNILSPAS GRPLAMPSLD MVTGVFHLSR VSEGAIGEGR
FFSSVAEAQM AFDAREIHLQ ARIQVRLRES TPPAEWAPPA DWLPGDPFTL ETTFGRCLLN
EALPEGYPFI NAQLNKKAQA AIVNDLAERY PKIQVAATLD ALKSAGFYWA TRSGVTVAIE
DVVAPPNKAQ ILDEYEQRAE RVEKQFGRGF LSDEERRSEL VQIWTEATNK IAEAMEANFP
ETNPVYTLVN SGAAGNMMQI RQLAGMRGLV SNPKGEIIPR PIKANFREGL TVVEYFISTH
GARKGLADTA LRTADSGYLT RRLVDVSQDV IVREEDCGTE RGILTRIARK GPDGVLVRDR
YAETSAYARS LASDAVDAQG EVVVPAGADA GDVVIGQIIE AGIESVRVRS ALTCESRMGV
CAHCYGRSLA TGKLVDVGEA VGIVAAQSIG EPGTQLTMRT FHSGGVAGDD ITQGLPRVVE
LFEARSPKGK APISEVTGRV KIEETEKTFK VVIVPDDGSE EIAYPVSRRS RLRVREGERV
EVGAQLIDGA VDPHEVLRIL GPRQVQLHLV DQVQEVYRSQ GVSIHDKHIE IIIRQMLKRV
NVLESGETTL LPGELVERAR FEGENRRVVE IGGQPASARP VLMGITKASL ATESWLSAAS
FQETTRVLTD AAINARSDSL VGLKENVIIG KLIPAGTGIS RYRNIRVEPT DEARAAMYSV
SGYEDGASVE YGAFGAGSGQ AVPLDEFDYR SSGDYR
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