| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6023 |
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| Symbol | rpsD |
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| ID | 5674344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 7346150 |
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| End bp | 7346779 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641244871 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001510273 |
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| Protein GI | 158317765 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.181485 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCGTT ACACCGGCGC GGACTGCAAG CGTTGCCGCC GCGAGAAGAC GAAGCTGTTC
CTCAAGGGCA GCAAGTGCGA GACCCCGAAG TGCCCGATCG AGATCCGGCC GTACCCGCCG
GGCGAGCATG GCCGCGGCCG CACGAAGGAC TCCGAGTACC TGCTGCAGAA GCGCGAGAAG
CAGAAGTGCG CGCGCATCTA CGGCATTCTG GAGAAGCAGT TCCGGGGCTA CTACGACGAG
GCGAACCGCC GCGCCGGCAA GACCGGTGAC GAGCTGCTGA AGATCCTCGA GTCGCGCCTG
GACAACGTGG TCTACCGGGG TGGCTTCGCG CCGTCCCGTG ACGCCGCCCG CCAGGCCGTC
CGGCACGGTC ACGTGCAGGT CAACGGCCGC AAGGTCGACA TCCCGAGCTA CCGGGTCACC
GAGAACGACA TCGTGGAGAT CGCGCCGAAG TCGCGCGAGC TCACCCCGTT CATCGTGGCC
CGCGAGACCG CGGGGACCGG CCGCACCGTC CCGCCGTGGA TCGAGGCCAT CCCCAGCCAG
ATGCGCCTGC TCGTCCACTC GCTGCCCGCG CGCCAGGTGA TCGACACCCA GGTGCAGGAG
CAGCTGATCG TCGAGCTCTA CTCGAAGTAG
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| Protein sequence | MARYTGADCK RCRREKTKLF LKGSKCETPK CPIEIRPYPP GEHGRGRTKD SEYLLQKREK
QKCARIYGIL EKQFRGYYDE ANRRAGKTGD ELLKILESRL DNVVYRGGFA PSRDAARQAV
RHGHVQVNGR KVDIPSYRVT ENDIVEIAPK SRELTPFIVA RETAGTGRTV PPWIEAIPSQ
MRLLVHSLPA RQVIDTQVQE QLIVELYSK
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