| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5968 |
|---|
| Symbol | |
|---|
| ID | 5674289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7271729 |
|---|
| End bp | 7272607 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641244816 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001510218 |
|---|
| Protein GI | 158317710 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.53264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.310406 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCGC TCAGGGAGCT GGACACGTGG CCCGTGCGGA CGGCCGCGGC CGTCGTGCTG
CGGTCGCCGG GCACGGGCGG TGCCGGTGGT GCGGCCGGTG CCGGTGGCCC CCGTGCCGTG
GCCACCCAGG TCGGTGTGGC AGGCGATCCG GCGGTCCGGT TCCGGCTCGC GTCGGTCTCC
AAGCTGATGA GCGCCTACGC GGTGCTCGTC GCGATCGAGG AGGGTGCCCT GGCGCTGGAC
GAGCCGGCCG GCCCGGAGTC GTCGACGGTG GCGCATCTGC TCGCGCACGC CTCCGGTCTC
GCGTTCTCGG GCGATCGGGT GATGGCCCGC CCGGGCACCC GCCGCATCTA CTCGAACACC
GGTTTCGAGG AGCTCGGGCG TCATCTCGAG CGGGTCACGG ACATCCCCTT CGATGTTTAC
CTGGAGGAGG CCGTTTTCCG GCCGCTGGGA ATGGGGACGG CCGTCCTCGA AGGTTCGCCG
GCGCATGCGG TGACGGCGAC GCTGGCGGAT GTCGGCGCGT TCGCCGCGGA ACTGCTGGCG
CCGAGCCTGG TCTCCGCGGC CACGTTCGCC GCGGCGACCT CGGTCGCCTT TCCGGGCCTT
GCGGGGGTGC TTCCGGGTTT CGGCGCGCAG CACCCGAACG ACTGGGGCCT CGGGTTCGAG
ATACGCGGAA CCAAGAGCCC GCATTGGACG GGTGCCACCA ACAGCCCTGC GACTTTCGGT
CATTTCGGGC GCTCGGGAAC CTTCGTCTGG GTCGACCCAG CGGTGAACGT CGCGTGCGTA
GTACTGACCG ATCGGGATTT CGGCGACTGG GCGGGCGCGG CCTGGCCGGT TCTCTCCGCG
GACGTCCTGG CTGAGCTGGA GGTGGCCCGG ACGGCCTGA
|
|---|
| Protein sequence | MDALRELDTW PVRTAAAVVL RSPGTGGAGG AAGAGGPRAV ATQVGVAGDP AVRFRLASVS
KLMSAYAVLV AIEEGALALD EPAGPESSTV AHLLAHASGL AFSGDRVMAR PGTRRIYSNT
GFEELGRHLE RVTDIPFDVY LEEAVFRPLG MGTAVLEGSP AHAVTATLAD VGAFAAELLA
PSLVSAATFA AATSVAFPGL AGVLPGFGAQ HPNDWGLGFE IRGTKSPHWT GATNSPATFG
HFGRSGTFVW VDPAVNVACV VLTDRDFGDW AGAAWPVLSA DVLAELEVAR TA
|
|---|
| |