| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5945 |
|---|
| Symbol | |
|---|
| ID | 5674266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7247315 |
|---|
| End bp | 7249057 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641244793 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001510195 |
|---|
| Protein GI | 158317687 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.152833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGT CGGCAGGCAA CACCGTGTTG TGGGCGCAGC TCCGCTCGAT GCCCGGACTG
CTCTCGCTGA GCGCGCTGGC AACCTTCACG CAGCAGGTGG CGATGCTGGC ACTGCCCTGG
TGCGTCCAGC ACGCCCTCGA CGACGGCATC ACCCCGCTGG ACGTCGCGGC CACGGTGCGG
TGGTCACTCA TCACCGCGCT GGTCTCGATC GCCTTCCTGC TCGGCGGGGC GGGCGGGCAG
TGGTGGTCGG GCGTCACGGC GAACCGGATC GCGCACTCGC TGCGCGAAGC GCTGGTGGGC
AAGGTGGTGA CGCTGGACCG GCCGGCCCTG ACCCGCTTCG GCCGCGGTGA CCTGGCGATG
CGCGTCACCC GGGACGTCGA CCTCATCCGG CTGTGGGTGC AGAACCTCGG GCTGTGGGTG
CGGGTCGTGG TGACCGTGGT CGTGGTCCTC CCGGCGACCG GGCTGCTCGA CCCGATGCTG
CTCGTCATCG TGATAGTCAC GTTTCCGCTG GTCGGCCTCG CGAACGCGTT CTTCCCCGGC
CGCTACGACG CGGCGAACGA GGCGCTGTCC GAGGCGCACG GCGCCCGCGC GGACGCGGTG
GAGGATCTGC TGGCGGCCAG CGCCGCGGTG CGCGGGCTGG GCGGCGAGCG GGTGCTCGTC
CGCCGCCACC ACGACCTGTC CGGCGCGGTC ACCTCCACGG CCCTGCGGGT CGCCGGGGTC
TCCGCCTGGT GGTCGTCCGT CCCTGCGGCC CTGCCACGGC TGGCGATCGC GGCCGGTCTG
GGCATCGGCG GCGCCGCGGC GATCAACGGC GACATCACCG TCGGCGGCCT GGTGGCCTTC
ACGTCCTGGA TGGCCACGCT GGCGCTGGCG ATCGCCGTCC TGGTGGATCT GCTGACCGGG
CGTGGCCAGG CACGCGTCGC CGCGGGCCGG ATCGCCGAGG TGCTCGACCT CCCGGGGACG
GCCGCCGACG ACCGCGACGC GGTGCCGCTG CCGGCCGGCG GCGTGCTGCA CGCCGGCGGC
GTGGTGGTCC GCCGGGACGG GCGCACCGTC CTCGGGCCGG CCGAGCTGTG GGCGGCTCCG
GGCGAGCTCG TCGCCGTGAC CGGGCCGACC GGTTCGGGCA AGTCCACCCT GGCCCACCTG
CTGTGCCGGC TCGAGGACCC GGACTCCGGG ACGGTGACGT TCGGCGGCGT GGATCTGCGC
GCCGCGGCCC GGACGGAGGT GCTGGCCAGG ATCGGGCTCG TCCCGCAGCG CCCGCTCGTG
CTCTCCGGGA CCGTCGCGGA CAACCTGCGC CTGGGTCGCG AGCTGGAGCT GGCCGAGCTG
CGCGCGGCCT GCCACGCCGC CGCGCTGGAC GAGTTCGTGA TGAGCCTGCC CGACCAGTAC
GACACCGTGC TCGGTGAGCG CGGCGGCACG CTCTCCGGCG GGCAGGGACA GCGGCTGGCA
CTGGCCCGCG GCCTGCTCGG CCGCCCGGCG GTCCTCGTGC TCGACGACGT CACATCGGCG
CTCGACGCGG AGACCGAGGC GGCGGTCCTC GAGCGGCTGC GGGCCTGGAA CCCGGCCGCC
GCGATCGTGA TGATCTCGCA CCGGCCCGCG GTGCTGGCCG CCGCCGACCG GACGGTCACG
CTGCACCCGC CGGACCGGGG CGCCGCCGGC GGGCCGCCCG GCGGCGGTGC CGTGCTTCCA
GACGACGACA GCTCCCTGCC CGGTGACGGT GCCGCGCTGC CCGCCGGAGG TAACCGTGGC
TGA
|
|---|
| Protein sequence | MAMSAGNTVL WAQLRSMPGL LSLSALATFT QQVAMLALPW CVQHALDDGI TPLDVAATVR
WSLITALVSI AFLLGGAGGQ WWSGVTANRI AHSLREALVG KVVTLDRPAL TRFGRGDLAM
RVTRDVDLIR LWVQNLGLWV RVVVTVVVVL PATGLLDPML LVIVIVTFPL VGLANAFFPG
RYDAANEALS EAHGARADAV EDLLAASAAV RGLGGERVLV RRHHDLSGAV TSTALRVAGV
SAWWSSVPAA LPRLAIAAGL GIGGAAAING DITVGGLVAF TSWMATLALA IAVLVDLLTG
RGQARVAAGR IAEVLDLPGT AADDRDAVPL PAGGVLHAGG VVVRRDGRTV LGPAELWAAP
GELVAVTGPT GSGKSTLAHL LCRLEDPDSG TVTFGGVDLR AAARTEVLAR IGLVPQRPLV
LSGTVADNLR LGRELELAEL RAACHAAALD EFVMSLPDQY DTVLGERGGT LSGGQGQRLA
LARGLLGRPA VLVLDDVTSA LDAETEAAVL ERLRAWNPAA AIVMISHRPA VLAAADRTVT
LHPPDRGAAG GPPGGGAVLP DDDSSLPGDG AALPAGGNRG
|
|---|
| |