| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5941 |
|---|
| Symbol | |
|---|
| ID | 5674262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7238440 |
|---|
| End bp | 7240176 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641244789 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001510191 |
|---|
| Protein GI | 158317683 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1021] Peptide arylation enzymes |
|---|
| TIGRFAM ID | [TIGR02275] 2,3-dihydroxybenzoate-AMP ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0214212 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCC CGGCGCCGGC GCCGGTGGAC GAGGGCTGGA CGCGCTGGCC GGCGGAGCTC
GAGCGGCGCT ACCGGGACGC GGGGTACTGG GGCGACCAGA CCCTGGGTGA CCTGCTGCGG
GAGTGGGCGC GCCGCTTCGG GCCGGCGACG GCGCTCGTCT CGGGACCCGA CCGGATCAGC
TACGCCGAGC TGGACGCGGC CGTGGACGAT CTCGCCGCCG GGCTGGCCAC CATCGGCATC
GGTCCCGGTG ACCACGTGGT GGTGCACCTG CCCAACCGCG CCGAGTTCGT GACCGTGCTG
TTCGCGCTGC TGCGCCGGGG CGCGATCGGC GTCCTCTCGC TGCCCGCCCA CCGCAGGGTC
GAGATCGAGC ACCTCGCGCG GCTCTCGGGC GCCGTCGGCT ATGTGATCGC CGACCGGCAC
GAGGGCTTCG ACTACCGGGA GCTGGCCCGG GAGGTCACCA AGGCGGTTCC CGCCGTGCGC
CACGTCCTGG TGGCCGGTGA GCCCGGCCCG TTCACCGCGC TGTCGGCGCT CGCCGCGGCC
GGGCGCGCCG CCCGGTCCGG CGGCGGCACA CGGACCGGGG CGGCCGGCGG TGCTGTCTCC
GTCACCGCGG CCGGCGCCGC TACCGACGAC GCCGGTAGCG GCGGGGCGGG CCCGGATCTC
GGCGCCGAGC GACCGGATCC GGGCGGTATC GCGGTGCTGC TGATCTCCGG CGGCACCACC
GGCAAGCCGA AGCTGATCCC GCGCACCCAT CGCGACTACG CCTACAACGC CCGCGCCAGC
GCGGACGTCT GCGGGCTGAC GGCGGACGAC GTGTACCTCG TCGCGCTGCC CGCCGCCCAC
AACTTCCCGC TGGCCTGCCC GGGGCTGCTC GGCGCGTTCG GCGTCGGGGC GACGGTCGTG
ATGGCTCCCT CCCCGAGTCC GGACGTCGCC TTCGACCTGG TCGCCCGCGA GCGGGTCACC
GTCACCGCGC TCGTCCCCCC GCTGGCCCGG CTGTGGGTCG AGGCGGCCGG GTGGGAGGGG
CCGGACACGA CGAGCCTGCG GCTGGTCCAG GTGGGCGGCG CCAAGCTCGA CGAGGGCCTG
GCGCGGCGGA TCACGCCGAC CCTCGGGGCG AAGGTCCAGC AGGTCTTCGG CATGGCCGAG
GGCCTGCTGA ACTACACCCG CCTCGACGAC CCGGACGAGC TCGTGTTCAC CACGCAGGGC
CGGCCGCTGG CCGCGGCCGA CGAGGTCCGG GTGCTCGACG GGTCCGGTGC CGGGGTGGTC
CCGGGCGAGG TGGGCGAGCT GTGGACCCGC GGGCCGTACA CGATCCGCGG GTACTACCGG
GCCGCCGAGC ACAACTGCGC CGTCTTCGAC GGCGACGGGT ACTTCCGCAC CGGCGACCTC
GTCCGCCAGC TCCCGACCGG CCACCTCGTG GTCGAGGGCC GGGTCAAGGA CGTGATCAAC
CGGGGTGGCG AGAACGTGTC CGCGGGTGAG CTGGAGGAGC ACCTGCTGAC CCATCCGGCG
ATCGGGCAGG TGGCGGTCGT CGGCATGCCG GACCCGGACG TGGGCGAGAG CGTCTGCGCG
GTGGTGGTCC TCGCGCCGGG CGAGGCCCTC CGGCTCAAGC AGGTCAAGAG CTACCTGCAG
GAGCGCGGCC TGGCCCGGTT CATGCTCCCC GACCGGCTCG AGGTCGTCGG CGAGTTCCCG
CTCACCGCCG TCGGAAAGAT CGACAAGCGG GAGCTGCGGA GCTGGCTGGA CCCCTGA
|
|---|
| Protein sequence | MTAPAPAPVD EGWTRWPAEL ERRYRDAGYW GDQTLGDLLR EWARRFGPAT ALVSGPDRIS
YAELDAAVDD LAAGLATIGI GPGDHVVVHL PNRAEFVTVL FALLRRGAIG VLSLPAHRRV
EIEHLARLSG AVGYVIADRH EGFDYRELAR EVTKAVPAVR HVLVAGEPGP FTALSALAAA
GRAARSGGGT RTGAAGGAVS VTAAGAATDD AGSGGAGPDL GAERPDPGGI AVLLISGGTT
GKPKLIPRTH RDYAYNARAS ADVCGLTADD VYLVALPAAH NFPLACPGLL GAFGVGATVV
MAPSPSPDVA FDLVARERVT VTALVPPLAR LWVEAAGWEG PDTTSLRLVQ VGGAKLDEGL
ARRITPTLGA KVQQVFGMAE GLLNYTRLDD PDELVFTTQG RPLAAADEVR VLDGSGAGVV
PGEVGELWTR GPYTIRGYYR AAEHNCAVFD GDGYFRTGDL VRQLPTGHLV VEGRVKDVIN
RGGENVSAGE LEEHLLTHPA IGQVAVVGMP DPDVGESVCA VVVLAPGEAL RLKQVKSYLQ
ERGLARFMLP DRLEVVGEFP LTAVGKIDKR ELRSWLDP
|
|---|
| |