| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5891 |
|---|
| Symbol | |
|---|
| ID | 5674213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7153452 |
|---|
| End bp | 7154708 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641244740 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001510142 |
|---|
| Protein GI | 158317634 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.559875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGTCGC AACCGCTCGC CCCGCCCCCG ATGCAGCCCG CGCAACCGGC CGCCTCCGCG
CCGTCGGCGC CGCCGGCACC GGGCGCCCCG GTGGTCATCC GCGCCTCCGG CGTCGGCAAG
AAGTTCGTCG CCTATCACAA GCGCGCCACC AGCCTGAAGG AACGCTTCGT CCGGCGGGAC
ACGACGAGCG GCGAGGACTT CTGGGCGCTG CGCGACATCG ACGTCGAGAT CGGCCGCGGG
CAGACGGTGG GGCTCGCCGG GGCGAACGGC TCGGGCAAGT CGACGCTGCT CAAGGTACTC
GCCGGAATCC TGCGCCCGAC CCACGGCGAC GTGTCCGTCA GTGGTCGGAT CGCGTCCCTG
CTCGAGCTGG GCGCGGGGTT CAACGGCGAG CTCTCCGGCC GGGACAACGT CTACCTCAAC
GCGTCCCTGC TCGGCCTGTC CAAGCGCGAG ATCGACCGGC TCTTCGACTC GATCGTCGAC
TTCTCCGAGC TGCGCCACAA GATCGACGAC GAGGTCAAGC ACTACTCGTC CGGCCAGTAC
GTGCGCCTCG GCTTCGCCGT GGCCGTGCAC GTCGACCCGG ACGTCCTGCT CGTCGACGAG
GTGCTCGCCG TCGGCGACGA GGCGTTCCAG CGCAAGTGCC TGGCCAAGAT CGCCCAGTTC
CGCGACGAGG GCCGGACGAT CCTGTTCGTC ACCCACTCCC TCGACCTGAT CGAGAACATG
TGCGACCGGA TCCTGGTGCT GGAGTCCGGC GGCCTGATCT TCGACGGGCA GCCGGTCGTC
GGGACGAAGC TGCTGCGCCA GCGGCTGGGC AGCCTGCCCG CGGACAGTCC GATCCCCTTC
GACCTGGCGC CGGTGAAGCC GACGGCGGTG GCGTTCAGCC GCAACCCGGG CGGGCCGACC
GAGGTGCAGT ACGACCCGGG TGAGCAGCTC ACGGTCAGCG TCGAGCTCGA CCTCACCGAC
AGCGCGCCGC AGTACGTCTA CCTGCACGTG GAGATCATGG GGCAGGGAGA GGTACCGATC
TGGATGATGG AGACCCCGCC GGGCGGGGTC AGCCCCGGCC CGGGGACCGC CGTGGTGGAC
TTCGTCGTCC CCCGGCTGCC CGAGCTGCTG GGGGCGTTCG CGATCAACGT CCGGGTGTCG
GACGCGGCCA CCGGCCAGCC GGTGACGGTA CGGCGCTTCG AGGAGCTGTT CGGGGTCAGC
GGCCCGCAGG TCGCCGGGCT GCTCAAGGTC GACTACGAGG CGAGGCTGCG CCGATGA
|
|---|
| Protein sequence | MPSQPLAPPP MQPAQPAASA PSAPPAPGAP VVIRASGVGK KFVAYHKRAT SLKERFVRRD
TTSGEDFWAL RDIDVEIGRG QTVGLAGANG SGKSTLLKVL AGILRPTHGD VSVSGRIASL
LELGAGFNGE LSGRDNVYLN ASLLGLSKRE IDRLFDSIVD FSELRHKIDD EVKHYSSGQY
VRLGFAVAVH VDPDVLLVDE VLAVGDEAFQ RKCLAKIAQF RDEGRTILFV THSLDLIENM
CDRILVLESG GLIFDGQPVV GTKLLRQRLG SLPADSPIPF DLAPVKPTAV AFSRNPGGPT
EVQYDPGEQL TVSVELDLTD SAPQYVYLHV EIMGQGEVPI WMMETPPGGV SPGPGTAVVD
FVVPRLPELL GAFAINVRVS DAATGQPVTV RRFEELFGVS GPQVAGLLKV DYEARLRR
|
|---|
| |