| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5850 |
|---|
| Symbol | |
|---|
| ID | 5674173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7097412 |
|---|
| End bp | 7098611 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641244700 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_001510102 |
|---|
| Protein GI | 158317594 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.707323 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCGGG CTTTCAGGTT CCTGCTCCGC CCGAGCGTGA AGCAGGCCGC CGCGCTGACG
GCGATGCTCG ATGATCACCG GGCACTTTAC AACGCCGCGT TGCAGGAACG ACGTGACGCC
TACCGGCATC CGTCGAAGGC GACGGTCCGC TACGGCGACC AGTCCGCCCA GCTCAGGGAG
ATCCGCGCCT GCGACCCGGA TCAGGGCCGC TGGTCGTTCT CCTCCCAGCA GGCCACCCTG
CGTCGCCTCG ACAAGGCGTT CGCCGGCTTC TTCCGCCGCG TCAAAGCAGG CGAGACCCCT
GGCTACCCGC GGTTCAGAGG CGCGGGCCGG TTCGACACGG TCGAGTGGCC GAGGGACGGG
GACGGCTGCC GCTGGAACTC CCAGCCCGAG CATCCCACCC GGACCCGGGT CCGGCTTCAA
GGTGTCGGTC ACGTCAAGGT TCACCAGCAC CGGCCGGTGG CGGGCACGGT CAAGACGGTC
TCGGTGCGGC GGGAAGGCCG CCGCTGGTAT GTGGTCCTCT CCTGCGACGA CGTGCCCGCG
CGGCCGCTGC CGGCCACCGG GGTGGTGGTG GGGGTGGATA TGGGTGTGGC GTCGCTGGTG
ACCCTCTCCG ATGGCCGTCA GGTCGGTAAC CCGCGTTTTC TTGCCGCGGC GGCCGGTCGG
CTCGCGCGTG CGCAACGGGA ACTGGCCCGT AAGAAGCGGG GGTCGACCCG GCGCCGGAAG
GCCGTCGCGA AGGTCGCCGC GCTGCACGGC AGGGTTCGCC GGCAGCGCCT CGACCTCGCG
CACACGGTCG CCCGCTCCCT GGTCGCTGAC CATGATCTGA TCGCTGTGGA AGCGTTGCGG
ATTGTGAACA TGACTCGCCG GGGCTCGCCG AGACCCGATC CGGACCGGCC CGGAGTGTTC
GTGGCGAACG GGCAGGCGGC GAAGTCCGGG CTGAACAGGA GCGTTCTCGA CGCGGGATGG
GGGGTGTTCC TCGCTGTGCT GCGTGCCAAG GCTGAAAGTG CCGGACGGAC GGTCGTCGAG
GTCAACCCCG CCAACACCTC CCGCACCTGC GCGGTCTGCG GGCACTGCCA CGCCGACAAC
CGCAGAACAC AGGCCGCGTT CACCTGTGTC GCGTGCGGGC ATGCCGCGCA CGCCGATGTG
AACGCGGCGA TCAACATCCT TCGGGCCGGG CTGGCCCGTC AGGCCACCGA AGCGGCCTGA
|
|---|
| Protein sequence | MRRAFRFLLR PSVKQAAALT AMLDDHRALY NAALQERRDA YRHPSKATVR YGDQSAQLRE
IRACDPDQGR WSFSSQQATL RRLDKAFAGF FRRVKAGETP GYPRFRGAGR FDTVEWPRDG
DGCRWNSQPE HPTRTRVRLQ GVGHVKVHQH RPVAGTVKTV SVRREGRRWY VVLSCDDVPA
RPLPATGVVV GVDMGVASLV TLSDGRQVGN PRFLAAAAGR LARAQRELAR KKRGSTRRRK
AVAKVAALHG RVRRQRLDLA HTVARSLVAD HDLIAVEALR IVNMTRRGSP RPDPDRPGVF
VANGQAAKSG LNRSVLDAGW GVFLAVLRAK AESAGRTVVE VNPANTSRTC AVCGHCHADN
RRTQAAFTCV ACGHAAHADV NAAINILRAG LARQATEAA
|
|---|
| |