| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5804 |
|---|
| Symbol | |
|---|
| ID | 5674127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7048174 |
|---|
| End bp | 7048689 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641244654 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001510056 |
|---|
| Protein GI | 158317548 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.335461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGG CGTCCCACGA GTCGTTCGAG GATTTCGTCA CTGCCTCGGC CGACCGTCTG
ATGAGGACGG CCTTTCTGCT GACCGGTAAC CGCCACGCGG CCGAGGACCT GCTCCAGGGT
GCCCTGGAGC GCACCTACCA GCGCTGGGGC AGGGAACGCA TCATCGCTCC GGAGGCCTAT
GTCCGCCGTG TGCTGGTGAA CGCGGCCTCG AGCCGGTGGC GGTCGCGACA GTTCCGGGAG
GAGCCGTTGG ACGCGGCGGC CGAACGGGCC GGTGCGGACG GCATGCCGGA TCTGGCGATG
CGGGACCAGG TGCTGAGGGC ACTGCGCGAA CTACCGAAAC GGCAACGCGC GGTGGTCGTC
CTGCGTTACT TCGACGACCT GCCGGAAGCC GCTGTGGCCG AGATCCTCGG ATGCAGCGTC
GGCTCGGTGA AGACCCACGC GTCGCGGGCG CTGGCCCGGC TGCGTGGGAG CCAGCATCTG
GGGGATGTCC GCGTCCGAAT CGAGAGGAGG CGTTGA
|
|---|
| Protein sequence | MDEASHESFE DFVTASADRL MRTAFLLTGN RHAAEDLLQG ALERTYQRWG RERIIAPEAY
VRRVLVNAAS SRWRSRQFRE EPLDAAAERA GADGMPDLAM RDQVLRALRE LPKRQRAVVV
LRYFDDLPEA AVAEILGCSV GSVKTHASRA LARLRGSQHL GDVRVRIERR R
|
|---|
| |