| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5790 |
|---|
| Symbol | smpB |
|---|
| ID | 5674113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7033533 |
|---|
| End bp | 7034009 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641244640 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001510042 |
|---|
| Protein GI | 158317534 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.84107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.636421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGAAGG AGACCGGGCG CAAGCTGATC GCGCAGAACA AGCGCGCCCG CCACGACTAC
GACATCCTCG ACACCTACGA GGCCGGGCTG GTCCTCATGG GTACCGAGGT CAAGGCGCTG
CGCGCCGGCC GCGCCTCGCT GGTGGACGGG TTCGCGCAGA TCGCCGACGG TGAGATCTGG
CTGCACAACG TGCACATCCC GGAGTACACC GAGGGCACGT GGACGAACCA CGCCCCGCGG
CGGCGGCGCA AGCTGCTGCT GCACCGCGCC GAGATCGAGA AGCTGATCGG CAAGACCCGC
GAGGGCGGCC TCACCGTCGT CCCCCTCTCG CTCTACTTCA AGGACGGGCG GGCGAAGGTC
GAAATCGCGT TGGCCCGCGG CCGCAAGAAC TACGACAAGC GCCACGCCCT CGCCGAGCGG
GACGCGGCGC GTGAGATGAG CCGGATCATG GGCCGGCAGG CGAAGGGCCG TGTCTGA
|
|---|
| Protein sequence | MPKETGRKLI AQNKRARHDY DILDTYEAGL VLMGTEVKAL RAGRASLVDG FAQIADGEIW
LHNVHIPEYT EGTWTNHAPR RRRKLLLHRA EIEKLIGKTR EGGLTVVPLS LYFKDGRAKV
EIALARGRKN YDKRHALAER DAAREMSRIM GRQAKGRV
|
|---|
| |