| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5717 |
|---|
| Symbol | |
|---|
| ID | 5674043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6938508 |
|---|
| End bp | 6939647 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641244570 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_001509973 |
|---|
| Protein GI | 158317465 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAA TCGACGCCCG AACCGGCCCA CCGCGACCGT CTGCCCACCC CGGCGCGACC
GACCTCACCA CGCCCACCGA GCAGGTGTTG CTGGCCGCGC CCGCCGAGAA CTTCCCGGTC
GCCTCGCGGC TGCTGCCCGC CGCGACCCGG GATCACCTCA ACGCGCTGTA CGTCTTCGGA
CGTCTCGTTG ACGACATCGG TGACGAGGCC CCCGGCGACC GCCTGGCGCT GCTCGACGAG
CTTGCCGCCG ACCTCGAGCT GATCTGGTCG GGCGGCGAGC CGAAGCTGCC CGTCCACCGT
CGGCTCGCGC ACACAGTGCG GGCCTGCGAC CTGCCGGCCG AGCCGTTCCG GCGGCTCGTG
CAGGCCAACC AGCAGGACCA GATCGTCACC AGGTACGACA CCTACGAGGA CCTCGTGCAG
TACTGCACCC TCTCGGCGGA TCCGATCGGC CGCATGGTGC TCGGGGTGTT CGGTCTGGCG
ACTCCGGCGC GGATCGCGCT GTCCGACCGC ATCTGTACCG CGCTGCAGCT CGCGGAGCAC
TTCCAGGACG TCGCCGAGGA CCTCGCGGCC GGCCGGATCT ACGTGCCGCT GGAGGACCTG
GACGCGTTCG GGGTGACCGA GGCCGACCTG GCCGCGCCGG TCGCCTCGCC CGCGGTGCGG
CACCTGATGG CCTTCGAAGT GGCCCGGGCT CGGACCTTGC TGGACCAGGG GGCACCGCTG
GTGAACCTGG TCGGTGGCCG GCTGCGGCTG GCGATGGCCG GATTCGTGGG GGGCGGCCGG
GCCGCGCTCG ACGCGATCCG CCGCGCCGAC TACGACATGC TCGGTGGCGC GCCCAAGGCC
CCCAAGCCCC GGATGGCGGC CTTCGCCGCG GCCGCGTGGG CCCGGTCGCT GGTGCCCGGG
CAGGCCGCGG CCGCCCGCGC CGCCGGCACC GCCGCCACCG CCGCCACTGC TTCAAGCACT
ACCGCTCCCA GCACTACCGC TCCCGGCGCC GCCGCTGCTG GCGGCACCGG TTCCAGCGGC
CCTGTTCCCA GCGGCACCGT TCCCACCACC ACCCCCGGCG GGGGCGCCGC GGTGGCGAGT
GCCGTCCCGG CTCCGGCGCC CGCCGGATCC GACGTCGACG TCCCGGAGGG TGCCAGATGA
|
|---|
| Protein sequence | MTAIDARTGP PRPSAHPGAT DLTTPTEQVL LAAPAENFPV ASRLLPAATR DHLNALYVFG
RLVDDIGDEA PGDRLALLDE LAADLELIWS GGEPKLPVHR RLAHTVRACD LPAEPFRRLV
QANQQDQIVT RYDTYEDLVQ YCTLSADPIG RMVLGVFGLA TPARIALSDR ICTALQLAEH
FQDVAEDLAA GRIYVPLEDL DAFGVTEADL AAPVASPAVR HLMAFEVARA RTLLDQGAPL
VNLVGGRLRL AMAGFVGGGR AALDAIRRAD YDMLGGAPKA PKPRMAAFAA AAWARSLVPG
QAAAARAAGT AATAATASST TAPSTTAPGA AAAGGTGSSG PVPSGTVPTT TPGGGAAVAS
AVPAPAPAGS DVDVPEGAR
|
|---|
| |