| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5602 |
|---|
| Symbol | |
|---|
| ID | 5673930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6795137 |
|---|
| End bp | 6796387 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641244456 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001509860 |
|---|
| Protein GI | 158317352 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.364458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00573263 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTTCTTTG CGCTGACTGA CGAGCAGCGT GCCCTGGGCG AGGCCGTCCG GGCCTTCCTC
GCCGGCCGTT TCGACCTCAC GGCGGTGCGG GCGGTGTTCG AGGACACCAC CGGTGACGGG
CACCCGCTGG AGCTGTGGAA GTCGGTGGGG GAGCAGGGCT GGCTGGCCGT GTGCGTCCCG
GAGGAGTTCG ACGGGCTCGG CCTCGGGCTG CTGGACGCCC AGGTGGTCGC CCGTGAGCTC
GGCGCGGGGG CCGTCCCGGG GCCGTGGCTG CCGACGGTGC TGGCTGGGGA GGCCGTCCGG
CTCGCCGGGT CGGACGCGCA GCAGGCCGAG CTGCTGCCCC GCCTCGCCGA CGGCGACCTC
GTGGCGACGG TGGCCCTGCG GGGAGCCGGC GGGGCCTGGG ACGCCTCCGG CGTGGCGGTC
ACCGCGCGCC CGGCGCCGGG CACCGTCTCC GGCATTGCCG CGGGGTCCAA CGGGTTTGGG
TCCGAAGGGA CCGGGGGCTC CGACGAGCCT TCGGGCTCCG GTGTGTTCGG CGGCTCCGGT
GGTCTCGTCG GTGAGCTGTC CGGGACGGCG TCGCCCGTCG AGTATCTCGG GGTCGCCGAC
CTCGTCGTCG TCGCGGCGAT CGAGCCCGGC CCCGCCGGCG CTGCTCCCGG AGCGGGCGAG
GTGGGCCTGT ACCTGCTCGA CCCCGGCGCG GACGGCGTCG CCGTCCGCCC GCTGGCCGGT
CCCGACGGGA CCACCCGGCT CGCCGCCCTG GAACTGGCCG GGGCGCGGGC CAGGCGGCTG
CCCGGCTCGT CGGCGGCGGC GCTCGCCGAC CTCATCCGCC GCGGCGCGCT GCTCACGGCG
GCGGACCAGG CCGGGGTCGC TCGCGAGGCG CTGACCAGGA CGGTTCACTA CGACCGGGAG
CGGATCCAGT TCGGCCGGCC GGTCGGCTCG TTCCAGGCGC TCAAGCACCA GCTCGCCGAC
CTGCACGTCG CGGTCACGAT GGCCGAGCAC GCCGTGATGT ACGCCGCGCA CGCGCTCGAC
GCGGGCCTCG ACGACCTGGA GCTCGCCGTC GCCGTCGCCA AGGCGAAGGC GAGTCAGGCG
GCTCGGGACG CCACCGCGGC GATGATCCAG TACCACGGCG GCATCGGGTA CACCTGGGAG
CACGAGGCCC ACCTGTTCTA CAAGCGCGCC CGCCGGATGT ACGGGGCCTT CGGTGACCCT
CCCGCCCACC TCGAGCGGGT CGCCGCGCTG ACCGTCGACT CCCTGACCTG A
|
|---|
| Protein sequence | MFFALTDEQR ALGEAVRAFL AGRFDLTAVR AVFEDTTGDG HPLELWKSVG EQGWLAVCVP
EEFDGLGLGL LDAQVVAREL GAGAVPGPWL PTVLAGEAVR LAGSDAQQAE LLPRLADGDL
VATVALRGAG GAWDASGVAV TARPAPGTVS GIAAGSNGFG SEGTGGSDEP SGSGVFGGSG
GLVGELSGTA SPVEYLGVAD LVVVAAIEPG PAGAAPGAGE VGLYLLDPGA DGVAVRPLAG
PDGTTRLAAL ELAGARARRL PGSSAAALAD LIRRGALLTA ADQAGVAREA LTRTVHYDRE
RIQFGRPVGS FQALKHQLAD LHVAVTMAEH AVMYAAHALD AGLDDLELAV AVAKAKASQA
ARDATAAMIQ YHGGIGYTWE HEAHLFYKRA RRMYGAFGDP PAHLERVAAL TVDSLT
|
|---|
| |