| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5600 |
|---|
| Symbol | |
|---|
| ID | 5673928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6792603 |
|---|
| End bp | 6793442 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641244454 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001509858 |
|---|
| Protein GI | 158317350 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0144285 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.006631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGGC CGACATCACC CCACACCCTG CCGGCGCCCG GCCGCGGCTC CGCGCGGGCC
GGCGCCTTAC CCCTCGACCG CTCCGGGCCC GCTCCGGGAA TCGCTCCCGG TGCGGGCCGG
CGCGGCGAGA GCGCCGACGC GGCCGTCCTG GATGCCGCCG CCGCGTCGCT GCTCAGCGTC
GGCGTGCGTC GGACGACCGC CACCGACGTG GCCCGGCGCG CCGGCGTCAG CCGGATGACG
CTGTACCGGC GCTGGCCCGA CCTGCGCTCC CTTGTCGGCG ACGTGATGAC GCGTGAGTGG
GGCCGGATCG TCACGGCCGC GGCGCGGGCG GCCGAGCCGT CCCTGGCCGC CGGCACGCGG
GCCGGCCTGG TGCGCTACCT GGTCACCGCG GCGCAGACCT TCCGCGCGAA CCCGCTGTTC
CGCAAGATCA TTGAGACGGA CCCGGAGCTG CTGGTCCCCT ACGTCCTGGA GCGCCTCGGC
GCGACCCAGC GGCTCGTCCT GGAGCTGCTG TGCGAGCAGC TGCGCGAGGC GCAGGCGGGC
GGCGCCGTCC GGGCGGGTGA CCCGGCAGCC CAGGCACGGA TGGTGCTGCT CGTCGTGCAG
TCGTACGTTC TCTCCGCGGA CGCGCTGGGC GACGAGATCA CCGAGGAGGC ACTGGCGCGT
GAGCTCTACC TGACACTGGA CGGCTACCTG GCCCCGCGCG CCGGCGAGAC AGCCGAGGCC
GCCTTCGACG CCGCTGACGC AACTGACGCT GTCAGGGCCG TTGACGTCGT TGAGGCCGTC
GAGGCTGCTG ACGCAGTTGA CGAGATCCGG CCGATCGAGC ACCCGGGAGC GCCGTCATGA
|
|---|
| Protein sequence | MTGPTSPHTL PAPGRGSARA GALPLDRSGP APGIAPGAGR RGESADAAVL DAAAASLLSV
GVRRTTATDV ARRAGVSRMT LYRRWPDLRS LVGDVMTREW GRIVTAAARA AEPSLAAGTR
AGLVRYLVTA AQTFRANPLF RKIIETDPEL LVPYVLERLG ATQRLVLELL CEQLREAQAG
GAVRAGDPAA QARMVLLVVQ SYVLSADALG DEITEEALAR ELYLTLDGYL APRAGETAEA
AFDAADATDA VRAVDVVEAV EAADAVDEIR PIEHPGAPS
|
|---|
| |