Gene Franean1_5510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5510 
Symbol 
ID5673841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6676231 
End bp6676863 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content69% 
IMG OID641244365 
Productoligoribonuclease 
Protein accessionYP_001509771 
Protein GI158317263 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.15717 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.933486 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGACAG CGACGGAAAT CCCTAATGTG AACGGGATGG ATCGCCTGGT TTGGATCGAC 
TGCGAGATGA CCGGCCTGGA TGCCGGTTCC GACCTGCTGC TCGAGGTCGC CTGCCTGGTG
ACCGACAGCG AGCTCACCGT GCTGGACGAA GGCATCGACC TCGTGCTGGC GGCCCCGGAC
GCGGCCCTCG ACCAGATGCT CCCGGTGGTC CGCGAGATGC ACGAGACCTC CGGGCTCACC
GAGGCCGTGC GCGGCTCCGA CCTCAAGCTC GACGAGGCCG AGGAGCAACT CCTCAGCTAC
ATCCGCCGGT TCGTCCCGGA GGCACGCAAG GCCCCGCTGT GTGGGAACTC GATCGCGACC
GACCGCACGT TCATCGCCCG CTACCTGCCC CAGCTCGACA CCTTCCTGCA CTACCGCATG
ATCGACGTCT CCTCGATCAA GGAGCTGGCC CGGCGCTGGT ACCCGCGGGC GTACTACGCG
GCCCCGGTGA AGTCGGGCGG GCACCGCGCC CTGGCCGACA TCCGGGAGAG CATCGAGGAG
CTGCGGTACT ACCGCGAGAT CCTCTTCGTG CCCCAGCCCG GCCCGACCAC TGACGCGGCC
CGCGCCGCGG CCGCCGCGAT CCGCGCCTCC TGA
 
Protein sequence
MTTATEIPNV NGMDRLVWID CEMTGLDAGS DLLLEVACLV TDSELTVLDE GIDLVLAAPD 
AALDQMLPVV REMHETSGLT EAVRGSDLKL DEAEEQLLSY IRRFVPEARK APLCGNSIAT
DRTFIARYLP QLDTFLHYRM IDVSSIKELA RRWYPRAYYA APVKSGGHRA LADIRESIEE
LRYYREILFV PQPGPTTDAA RAAAAAIRAS