| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5456 |
|---|
| Symbol | |
|---|
| ID | 5673787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6597582 |
|---|
| End bp | 6599099 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641244311 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001509717 |
|---|
| Protein GI | 158317209 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.247953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.756284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGAAG CAACACACAC CTCTCGGACG CGGGCACCAC ATCCCGCCGC TGAGCGCCCG
GCGGCCGGCG GAGCCCTGCT GGCCGTCATC CTCCTCGGCC AGTTCATGGC CATCCTGGAC
GTCAGCATCG TCAACGTGGC GCTGCCGACG TTGCGGACGG ATCTGGACGT CTCCGGCGCC
GGGCTACAGC TGATCGTCGC CGGCTACGTC CTCTCCTACG CGGTTCTGCT GATCACCGGT
GCGCGGCTGG GCGGCATGCT CGGGCACCGG CGCGTGTTCA ACACCGGGCT CGCCGGGTTC
ACCGTGGCCT CGCTGGCCTG CGGCCTGGCA CCCGGCACGT CCTCACTGAT CGCCTTTCGG
TTCCTGCAGG GGGTCAGCGC CGCGTTGATG ACCCCCCAGG TCATGAGCCT GATCCAGCGC
AATTTCGCCG GTGCCGCGCG GATGCGGGCG CTCGGCTACT TCTCCGCGGT GATCGCGGGA
GGCGTCGTCG TCGGCCAGGC CGCCGGCGGG CTGCTCGTCA GCGCGAACCT GTTCGACGCC
GGCTGGCGGA CCGTCTTCCT GGTGAACGTG CCGATCGGGG TGCTGCTGCT CGTCGTCGGC
CCGCGGGTCA TGCCCTCGGA CGAGGGGCGC GCGGGGGTCG ACCTCGACCT TCCCGGCCTG
CTCGTTCTCA GCGCGGCGGT GCTGCTCTTC GTGATGCCGC TGATCCTCGG TCACGAGCTG
GGCTGGCCGG CCTGGACGGC CGTGTCGCTG GCGGCGAGTG TCGTCCTGTT CGTGGTCTTC
GTCCTGGTGG AGCGGGGCGT CGCGGCCCGC GGGCGACGTC CGCTGATCTC GGGACGGGTG
CTGCGCGCGC CCGGGCTGCT ACCCGCCGCC GGCACGCTGC TGCTCGGGCC GGCGTCGTGG
GCCGGGTTCC TGTTCACCAC CACCCTGCAC CTGCAGGGCG ACCTGGGGAT GAGTCCGCTG
CGCTCCGGGC TGGCGTTCGT CCCGTGCGTC GTCGCGTTCG CCGCGGTCGG GCTGAGCTGG
CAGCGCCTGC CGTCCAGCTG GCACGCGAAC CTGATCCCGG TCGGGCTGGC GTTCGCCGCC
GTCTCGTATC TGTTCCTCGG GCCGCTGGCC GGCGGCGGCG CGCGCTACGA GATCCTCACC
GCGTTGATCG GCCTGGGACT CGGCGTGATG TCGATCATCA TCTCGGTGAC GCTCGAACAC
GTCCCGGTCG AGGACGCGGC CGACGCCAGC GGCCTGCTGC TGACCCTGAT GCAGCTCGGC
CAGGTCATCG GCATCGCCAC GGTCGGCACG GTGTTCCTGA CCACCGCCGC CGACGGCGGC
TCGACCCGCG ACGCGGAGTA CAGCACCGGC TGGGCGCTCG CGGCGGTCGC GTTCGTCGCG
GCGGCGAGTG CCCTCCTGCT CGCCCGGCGT CGCGGGCGGC AGCTGAGAGT GGTCGTTCCC
GTCCAGGCAC ACGACGTCGA TCCGGACCGT GCGGATCAGG TGATCGTGGC CGCTCCCACA
GTGCCGACCG GCGTCTAA
|
|---|
| Protein sequence | MVEATHTSRT RAPHPAAERP AAGGALLAVI LLGQFMAILD VSIVNVALPT LRTDLDVSGA
GLQLIVAGYV LSYAVLLITG ARLGGMLGHR RVFNTGLAGF TVASLACGLA PGTSSLIAFR
FLQGVSAALM TPQVMSLIQR NFAGAARMRA LGYFSAVIAG GVVVGQAAGG LLVSANLFDA
GWRTVFLVNV PIGVLLLVVG PRVMPSDEGR AGVDLDLPGL LVLSAAVLLF VMPLILGHEL
GWPAWTAVSL AASVVLFVVF VLVERGVAAR GRRPLISGRV LRAPGLLPAA GTLLLGPASW
AGFLFTTTLH LQGDLGMSPL RSGLAFVPCV VAFAAVGLSW QRLPSSWHAN LIPVGLAFAA
VSYLFLGPLA GGGARYEILT ALIGLGLGVM SIIISVTLEH VPVEDAADAS GLLLTLMQLG
QVIGIATVGT VFLTTAADGG STRDAEYSTG WALAAVAFVA AASALLLARR RGRQLRVVVP
VQAHDVDPDR ADQVIVAAPT VPTGV
|
|---|
| |