| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5323 |
|---|
| Symbol | |
|---|
| ID | 5675759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6413690 |
|---|
| End bp | 6414958 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641244181 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001509587 |
|---|
| Protein GI | 158317079 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0388032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCA ACACCAACGG CCCGGCGAAC GGCCGGCGCA AGGAACGCAC CAAGCGCGCG
AACGGTCAGG GCTCGATCTA CCAGCGCGGG GACGGCCTGT GGGCCGGCGC GGCCTACGTC
CTCATGCCGG ACGGCACGAC GAAGCGGCGG CCGGTCTACG GCAAGTCGGA GGAGATCGTC
CGCGGCAAGC TGACCGAGCT TCAGGCCAAC TCGGATCAGG GCATTCCGGC GGACGCTACC
GGGTGGACGG TCGAGCGGTA CCTGACGGCC TGGCTCGCTC AGACCGTGAA GCCGAACCGT
CAGCCGAACA CGTACGTGAC CTATGAGAAG GCGGTCCGGA TCTACCTCGT GCCGGGTCTC
GGGAAGAAGC GGCTGAACAG GCTGACCGGT GCGGACGTCC GGCAGTTCAT CCGGCGGACG
GAGAGCACCT GCCGGTGCTG CGCCCGGGGA GTGGACAAGG CACGACCGGA GGAGGAGCGG
CGTTGCTGCG CGGTCGGCCG GTGCTGCAAG CGGTTGCCGT CGAAGCGTCA GGTTCAGGTC
GTGCATGCGG TGCTGCGTAA CGCTCTCCAG GCGGCGGTCC GGGAGGAGCT GATCCGGCGG
AACGTCGCGA AGCTGGTGCA GGTCTCCACC CCGCGCTACG GCGTCGACCG CGGCCTGACC
GTCGAGCAGG CGCATCAGCT CCTCGACGCG GCGGCGGGCG ACCGGCTGTA CGCGCTGCTG
GTCCTGGCGC TGTTCCTCGG GATGCGGCGC GGGGAGTTGC TCGGTCTGCA GTGGTCGGAC
ATCGACTCTG AGCGGGAGAC GCTGACGGTG CGTCACACGC TGCTGCGGGT CGGCGGGGAG
CTGCGGCTGT GCCCGCCGAA GACGGAGGAC TCCGAACGGA CGCTGCCGCT CCTCGGCCTG
GTCGCGGATG CGCTGGCGGA GCATCGCAAG CTCCAGGACG CTGAACGTGC GGCGGCCGGC
GACGCCTGGG TGCAGACCGG CCACGTGTTC ACGACGAAGA TCGGGACTCC GATCGAACCG
GACAACCTGC GCCGGTTCTG GCTGCCGCTG CGCCGTGCGG TCGGGCTCGA CGGGGTGGTG
TTTCACGGGC TGCGGCACAC CTGCGTGACG CTGCTCCTGG ACCTCGGTGT GCCGCCGCAC
ATCGTCCGGG ACATCGCGGG CCACTCGGCG ATCGAGGTGA CGATGACGAT CTACGCGCAT
GCCTCGATGG GGGAGAAGCG GCGCGCCCTG GGCAAGCTCG ACGGCCACCT GACCGAGCCC
CGGGACTGA
|
|---|
| Protein sequence | MPSNTNGPAN GRRKERTKRA NGQGSIYQRG DGLWAGAAYV LMPDGTTKRR PVYGKSEEIV
RGKLTELQAN SDQGIPADAT GWTVERYLTA WLAQTVKPNR QPNTYVTYEK AVRIYLVPGL
GKKRLNRLTG ADVRQFIRRT ESTCRCCARG VDKARPEEER RCCAVGRCCK RLPSKRQVQV
VHAVLRNALQ AAVREELIRR NVAKLVQVST PRYGVDRGLT VEQAHQLLDA AAGDRLYALL
VLALFLGMRR GELLGLQWSD IDSERETLTV RHTLLRVGGE LRLCPPKTED SERTLPLLGL
VADALAEHRK LQDAERAAAG DAWVQTGHVF TTKIGTPIEP DNLRRFWLPL RRAVGLDGVV
FHGLRHTCVT LLLDLGVPPH IVRDIAGHSA IEVTMTIYAH ASMGEKRRAL GKLDGHLTEP
RD
|
|---|
| |