| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5318 |
|---|
| Symbol | |
|---|
| ID | 5673652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6405505 |
|---|
| End bp | 6407187 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641244175 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_001509582 |
|---|
| Protein GI | 158317074 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.134924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.268079 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGT ACGTCTTCCA GATGCGCAAG GCCCGCAAGG CCCACGGCGA CAAGGTGATC
CTCGACGACG TCACCCTGGC GTTCCTGCCC GGCGCGAAGA TCGGCGTCGT CGGGCCGAAC
GGTGCCGGGA AGTCGTCGCT ACTCAAGATC ATGGCCGGCC TCGACCACCC GAGCAACGGC
GACGCGATCC TGAGCCCCGG CTACACGGTC GGCATGCTCG CGCAGGAGCC GCGGCTCGAC
GAGGCCAAGG ACGTCCGCGG CAACGTCGAG GACGGCGTCC GCGAGATCCG CGCGGTGCTT
GCCCGGTACG AGGAGATCAA CGAGAAGATG GCCGCGCCCG ACGCGGACTT CGACACGCTC
CTCGCCGACC AGGCGGCGCT GATCGACAAG ATCGAGGCGG CGAACGCCTG GGAGCTCGAC
AGCCAGATCG ACCAGGCGAT GGACGCCCTG CGCCTGCCGC CCGGCGACGC GGACGTCACC
GCGCTCTCCG GTGGTGAGCG CCGCCGGGTG GCGCTGTGCA AGCTGCTGCT CGAGGCGCCC
GACCTGCTGC TGCTGGACGA GCCGACCAAC CACCTCGACG CGGAGAGCGT CGCCTGGCTG
GAGCAGCACC TGGCCCGCTA CGCCGGGGCG GTGCTGGCCG TCACGCACGA CCGGTACTTC
CTCGACAACG TCGCCGGCTG GATCCTCGAG CTCGACCGCG GCCGCGCCCA CCCCTACGAG
GGCAACTACT CCACCTACCT GGAGAACAAG GCGTCCCGGC TCAAGGTCGA GGGCCAGAAG
GACGCCAAGC GCCGCCGGGC GCTCGCCCAG GAGCTCGAGT GGGTCCGCTC GAACCCGAAG
GCCCGCCAGG CCAAGAGCAA GTCCCGCCTC GCCCGTTACG AGGAGCTGGC CGCCGAGGCG
GACAAGGCCA GGCCGCGCGA CTTCGAGGAG ATCCAGATCC CGCCCGGCCC GCGGCTGGGC
AGCCTGGTGA TCGAGACGAA GAAGCTCACC AAGGGCTTCG GTGAGCGGGT GCTCATCGAC
GACCTGTCGT TCAGCCTGCC GCGCGGTGGC ATCGTCGGCG TGATCGGCCC GAACGGCGTC
GGCAAGACCA CGCTGTTCAC GATGCTTGTC GGCCAGGCGT CGCCTGATTC CGGCGAGCTG
CAGATCGGCG AGACGGTCGA CATCGCCTAC GTGGACCAGT CCCGCGGCGG TCTCGACGCG
AAGAAGAACG TGTGGGAGAT CGTCTCCGAC GGGCTGGACC ACATCGTCGT CGGGAAGACC
GACATCCCGA GCCGGGCGTA CGTGTCGTCG TTCGGGTTCA AGGGGCCTGA CCAGCAGAAG
CCGGTCGGCG TGCTCTCCGG CGGAGAGCGC AACCGGCTGA ACCTGGCGCT GACCCTCAAG
CGCGGCGGCA ACGTGCTGCT GCTCGACGAG CCCACGAACG ACCTGGACGT CGAGACCCTG
CGGTCGCTGG AGGAGGCGCT GCTGGAGTTC CCGGGCTGCG CCGTGGTCGT CTCCCACGAC
CGGTGGTTCC TGGACCGGGT CGCGACGCAC ATCCTGGCCT GGGAGGGCAC CGAGGCCGAC
CCGGCCCGCT GGTTCTGGTA CGAGGGCAAC TTCGCCGACT ACGAGACCAA CAAGGTCGAG
CGGCTCGGTG CGGACGCGGC CCGCCCGCAC CGGGTGACGT ACCGCAAGCT CACCCGCGAC
TAG
|
|---|
| Protein sequence | MAQYVFQMRK ARKAHGDKVI LDDVTLAFLP GAKIGVVGPN GAGKSSLLKI MAGLDHPSNG
DAILSPGYTV GMLAQEPRLD EAKDVRGNVE DGVREIRAVL ARYEEINEKM AAPDADFDTL
LADQAALIDK IEAANAWELD SQIDQAMDAL RLPPGDADVT ALSGGERRRV ALCKLLLEAP
DLLLLDEPTN HLDAESVAWL EQHLARYAGA VLAVTHDRYF LDNVAGWILE LDRGRAHPYE
GNYSTYLENK ASRLKVEGQK DAKRRRALAQ ELEWVRSNPK ARQAKSKSRL ARYEELAAEA
DKARPRDFEE IQIPPGPRLG SLVIETKKLT KGFGERVLID DLSFSLPRGG IVGVIGPNGV
GKTTLFTMLV GQASPDSGEL QIGETVDIAY VDQSRGGLDA KKNVWEIVSD GLDHIVVGKT
DIPSRAYVSS FGFKGPDQQK PVGVLSGGER NRLNLALTLK RGGNVLLLDE PTNDLDVETL
RSLEEALLEF PGCAVVVSHD RWFLDRVATH ILAWEGTEAD PARWFWYEGN FADYETNKVE
RLGADAARPH RVTYRKLTRD
|
|---|
| |