Gene Franean1_5310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5310 
Symbol 
ID5673644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6393672 
End bp6395699 
Gene Length2028 bp 
Protein Length675 aa 
Translation table11 
GC content75% 
IMG OID641244167 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001509574 
Protein GI158317066 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.223849 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCCGC CGCCGACCGG GTGTGAGCCC GCTGCCGCTG TCAGTGCCGA CGACGCCGAC 
GAAACTGGCC AGGTCGAAGA GGCCGGTAAG GCCGGTAAGG CCGACAACGC CGACGAGGTC
GGTGTGACCG GGCCGGAGCA GCCGGCGAAC ACGCTGGTCG AGGGCCGGCG GGTGGGGGGT
CCGTCGTCCC AGCCGGCGGC GTCGCGCTGG CCGAGCCGGC TCCCGCGGCT GACGCTGCGG
GCCCGGATGG CGCTGCTCGC CGGGGTGGCC GTCGCCGCCG CGGTCGCCGT CGTGGTCAGC
GTCGCCCTCG GCGTCACCCG GATCGTGCTG AACCAGGCGA TCGACGACCA GCTCCTGGAA
CAGGCCAAGG CGTCGGCCGG CAACCTGCAG GCGAGCCAGA TCAGCGTCCG GGCCCTGAAC
TTCGGCATGG AGCTGCAGTT CCTCGACGGC GACGGAGTGC CCCTGGAGAG CGCCTTCCCG
TCGCTGGAGA CCTTCGCGAT CCCCGTCGAC GCGGCCGACG CCGAGGTCGC GCGGGGCCTG
CGTGGCAAGA ACCTGCGCAC CGTCACGGTC GAGGGCCAGC GGTACCGGGT GGCCACCGTC
CCGCTGCGCT ATCCGCCGCC ACTCACCGGC ACCGGGGCCC TGCAGCTGGC CCGGTCCACC
TCCGACGTGG ATCGCACGCT GCGCGATCTC GGGCTGGTGC TGTTCATCGT CGGGCTGGTC
GGCGTGGTCG GCTCGGTGAT CGCCGGCCGC CTCGTCGCCC GTGCCTCGCT GAAACCGGTG
GACGCCGCGG CGGCCGCGGC GGAGGAGGTG GCGCGTACCC AGGACCTCTC CGCCCTGATC
CCGGTCACCG GCTCGGACGA GATCGCCCGG CTGGCTACCA GCCTCAACAG CATGCTGCGG
GCGCTGGAGG CATCCCGGCT GCGGCAACGC CAGCTCGTCG ACGACGCCGC CCACGAGCTG
CGCACGCCGC TGACCAGCCT GCGCACCAAC ATCGAGCTCC TGATGCGAGC GGAGACGACT
CCGAACCGGG CGCTGCCCGC GGCGGACCGT GACGCGCTGC TGCGCGACGT CGACGCCCAG
ATGCGCGAGC TGACCGCGCT GGTCAACGAG CTGATCGAGC TGGCCCGCGA CGAGGTGCCC
ACGGAGGAGA TCGAGCGGCT CGACCTCGCC CAGGTCGTGC GGGCCGCCGC GGACCGGGCC
CGGCGCCGGG CGAACACCAA GGGCATCCGG ATCGAGGTGA GCGTCGAGCC GTCCCTGGTG
GACGGGCGGC CGAGCCTGCT GGAGCGGGCG GTGACCAACC TGCTGGACAA CGCGGTGAAG
TTCAGCCCGC CGTCCTCGAC CGTGCGGGTG GTCAGCCGGG CCGGCGAGGT CACCGTCGCC
GACGAGGGCC CGGGCATCGC GCCGGCCGAC CGGGCCCGCG TCTTCGAGCG CTTCTACCGG
GCCACGGCGG CGCGCAGCCT GCCCGGCTCC GGCCTTGGCC TGGCGATCGT CGCGGACGCC
GCGGCGATGC ACGGCGGGAC GGCCGAGGCC GCCGAGTCGC CGTCCGGCGG CGCGCTGCTG
CGGATGACAT TGCCCTGCGT GGCGGCCTGG GAGCGGGGGG TTCCCTGGGA CGGCGACGAT
CCCGTCGGGT ACGGCGGGTT CGTCTCCGAC GGCGGGACCG CCGGCGCGAA CGGCTTCCTT
TCGGTAGATG GCCCTCCTCC GATGAGCGGC CCTCTGTCCA TGGGCGGCTT CGCTCCGGCG
GGCGGAGCCG GGCCCGTGGG CGTCTCCCCG GCGCGCTCGG GGCCCGCGGC TGCGGACGCG
GACTCGCCGT GGCGGCGGCC GGCCGGCGGC TCCGCAGCGG CCGCCGAAGC GGAGCAGGCG
GTGGCCGAGA GAGCGGAGAA GGCAGAACAG ACGGCAGAGC GGGCGGCTGG GCAGAAGGCG
GGCGGGGCAG GCACGGGCGG TCCGGCCACG GCGCCCGGCG TTGGCGCGGA GCGGCCCGGG
GGGCGTTCGA CGGTCCGCCC GGGGCAGCGG GCAGGATCAG GTCCGTGA
 
Protein sequence
MNPPPTGCEP AAAVSADDAD ETGQVEEAGK AGKADNADEV GVTGPEQPAN TLVEGRRVGG 
PSSQPAASRW PSRLPRLTLR ARMALLAGVA VAAAVAVVVS VALGVTRIVL NQAIDDQLLE
QAKASAGNLQ ASQISVRALN FGMELQFLDG DGVPLESAFP SLETFAIPVD AADAEVARGL
RGKNLRTVTV EGQRYRVATV PLRYPPPLTG TGALQLARST SDVDRTLRDL GLVLFIVGLV
GVVGSVIAGR LVARASLKPV DAAAAAAEEV ARTQDLSALI PVTGSDEIAR LATSLNSMLR
ALEASRLRQR QLVDDAAHEL RTPLTSLRTN IELLMRAETT PNRALPAADR DALLRDVDAQ
MRELTALVNE LIELARDEVP TEEIERLDLA QVVRAAADRA RRRANTKGIR IEVSVEPSLV
DGRPSLLERA VTNLLDNAVK FSPPSSTVRV VSRAGEVTVA DEGPGIAPAD RARVFERFYR
ATAARSLPGS GLGLAIVADA AAMHGGTAEA AESPSGGALL RMTLPCVAAW ERGVPWDGDD
PVGYGGFVSD GGTAGANGFL SVDGPPPMSG PLSMGGFAPA GGAGPVGVSP ARSGPAAADA
DSPWRRPAGG SAAAAEAEQA VAERAEKAEQ TAERAAGQKA GGAGTGGPAT APGVGAERPG
GRSTVRPGQR AGSGP