Gene Franean1_5290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5290 
Symbol 
ID5673624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6363858 
End bp6364751 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content74% 
IMG OID641244147 
Productexodeoxyribonuclease III Xth 
Protein accessionYP_001509554 
Protein GI158317046 
COG category[L] Replication, recombination and repair 
COG ID[COG0708] Exonuclease III 
TIGRFAM ID[TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.024265 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.868104 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGGATCG CGACCTGGAA CATCAACTCG GCCAAGGCCC GGCAGCCCCG GCTGATCGAA 
TGGCTTGACC GCGCGAGCCC CGACGTGGTC TGCCTGCAGG AGACCAAGCT CTCGGACGAG
GCGTTCCTCG AGCTCTTCGA CGAAGATCTC TTCCGCCGCG GCTACCGGGT CGCGCACCAC
GGCGACGGCC GCTGGAACGG GGTGGCGATC CTCTCCCGCG CCGGGCTGGA GGATGTGCGG
CGCGGGCTGC CCGGCGACCC CGGGTTCCCG GGGCCCGAGC CGCGGGCGAT CTCCGCGAGC
TGCGGCGGGA TCCGGATCTG GTCGCTGTAC GTGCCCAACG GGCGCACGGT GGAGGACCCG
CACTACGCCT ACAAGCTGGC CTGGCTGGCC GCACTGCGCG ACGTCGTGGC CGAACTCGCC
CCGCAGGGGC CGGTGATGAC GCTCGGCGAC TTCAACATCG CGCCGACGGA CGCCGACGTC
TGGGACATCG CCGAGTTCGA GGGCGCGACC CACGTGACCG AGGCCGAGCG CGCCGCGCTC
GGGCGGCTGC ACGACGCCGG CCTGCTCGAC CTGATGCGCG AGCGCTGGCC GGACGAGACC
GTCTACACCT ACTGGGACTA CCGCCAGCTC TGCTTCCCCA AGAACTACGG GATGCGCATC
GACCTGACCC TGGCCACGGC CGACGTCGCG GCCCGGGCAC GCGCGGTGTG GGTAGACCGG
GCTGCCCGCA AGGGCACCGG GACGAGCGAC CACGCCCCGG TCGTCGTCGA CCTGGACGAG
GCGCCGGACG GCGACATCGG CCCGATGGTG CCGCCCCCGT CCTCGCGCGG CTCCTCCGCG
CGTGGGTCGT CCTCCCGCGC CGGGGCGGGC ACCCGCCGCC GCGCCTCCAC CTGA
 
Protein sequence
MRIATWNINS AKARQPRLIE WLDRASPDVV CLQETKLSDE AFLELFDEDL FRRGYRVAHH 
GDGRWNGVAI LSRAGLEDVR RGLPGDPGFP GPEPRAISAS CGGIRIWSLY VPNGRTVEDP
HYAYKLAWLA ALRDVVAELA PQGPVMTLGD FNIAPTDADV WDIAEFEGAT HVTEAERAAL
GRLHDAGLLD LMRERWPDET VYTYWDYRQL CFPKNYGMRI DLTLATADVA ARARAVWVDR
AARKGTGTSD HAPVVVDLDE APDGDIGPMV PPPSSRGSSA RGSSSRAGAG TRRRAST