Gene Franean1_5206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5206 
Symbol 
ID5673540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6251391 
End bp6252170 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content78% 
IMG OID641244060 
Productpolysaccharide deacetylase 
Protein accessionYP_001509470 
Protein GI158316962 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0262209 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGCGC GGCCCTCGTC CGGGGACGGT TTCGGGGCCA GGGGCGGTTG CGAGGCCGGG 
GGCGGGGCGG GCGGGCCGTC CCGGCGACGG CTGCTGGGGT GGTCGATCGC GGGAGCGGCC
GGCCTCACGG CACTCGGCGC GGTCGACCCG GCCCTGGCCG CCCCCGCGGC GGGCAGGCGG
TCGGGCGCGG TGAGCCGGGT CCGCGGCGCG CGGCCCGCGG CGCCGGCGAA CGCGATCGCG
CTGACCATCG ACGACGGACC GCACCCGGTC TGGACGCCGC GGATCCTGGA GGTGCTGCGT
GGCAACGGTG TCCGCGCGAC CTTCTTCGTC ATCGGGGTCC AGGCGAAGGC CCACCCGGAG
CTGGTCCGGC GCGTCCTCGC CGAGGGGCAC ACCGTCGGCA ACCACTCGCT CGACCATCCG
ACGCCGTTCG GCGCCGGCTC CGCCGCGACG GTCGCCCGGG AGATCTCCGC GGCCCAGGCG
ATCATCACCG CGGCCGGTGG GATCGCTCCC CGGTACTTCC GGTCGCCCGG CGGGGACTGG
CCGCCGGCCG TCCTCGCGGC CGCGGCCGCG CAGCACCTGA CACCGGTCGG CTGGAGCGTC
GACCCACGCG ACTGGACCCG GCCCGGGGCG GCGTCGATCG TGCGGTCGCT GACCGGCGCC
CGGGCGGGCG ACATCCTGCT GTGTCACGAC GGCGGCGGCG ATCGATCGCA GACCGTCGAG
GCGCTTCGCC AGGTCCTGCC GGCGCTGCGG GCCAGGGGCC TTACCTTCAT GCCCCTGTGA
 
Protein sequence
MIARPSSGDG FGARGGCEAG GGAGGPSRRR LLGWSIAGAA GLTALGAVDP ALAAPAAGRR 
SGAVSRVRGA RPAAPANAIA LTIDDGPHPV WTPRILEVLR GNGVRATFFV IGVQAKAHPE
LVRRVLAEGH TVGNHSLDHP TPFGAGSAAT VAREISAAQA IITAAGGIAP RYFRSPGGDW
PPAVLAAAAA QHLTPVGWSV DPRDWTRPGA ASIVRSLTGA RAGDILLCHD GGGDRSQTVE
ALRQVLPALR ARGLTFMPL