| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5169 |
|---|
| Symbol | ligC |
|---|
| ID | 5673503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6201061 |
|---|
| End bp | 6202287 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641244023 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_001509433 |
|---|
| Protein GI | 158316925 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00454515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAGG ATCGGCGGGT GGACCTGCCT GTGACACCGC CGGTGAAGCC GATGCTCGCC
CGCGCGGCGC CGCAGATCCC CCCGGACATG CTGTATGAGC CGAAGTGGGA CGGCTTCCGC
GCCCTGGTCT TCCGTGACGG GGCCGAGCTG GAGATCACCT CGCGCAACAC CCGGCCGATG
ACCCGCTACT TCCCCGAGCT GGTCGAGGTG CTGCTCGCGG CACTGCCCGA CCGCTGCGTG
CTTGACGGCG AGATCGTCGT CGTCGGCCCG AACGGACTGG ACTTCGAGGA GCTGTCGCAA
CGGGTGCATC CGGCGACCAG CCGGGTGGCG AAGCTCGCGC TGGAGACCCC GGTCTCGTTC
GTCGCGTTCG ACCTGCTGGC ACTCGGTGAC GAGGCGTTCA CGGACCAGCC GTTCGCCCGG
CGGCGCGCCG TGCTCGAGGA GGTTCTCGCC GGCCACGCCG GCCCGGCTGC GCCCGGAACG
GCACCGGCCC GGCGGATCCC GAGCGGGGTC TACCTCACGC CCTCGACCGG CGAGCTCGAC
ATGGCCCGGC AGTGGTTCGA GCTCTACGAA GGCGCGGGGC TCGACGGGCT GGTCGCCAAG
CCGCCGGACG GGGCGTACCA GCCGGACAAG CGCGCAATGT TCAAGATCAA ACATGACCGC
ACCGCCGACT GCGTCGTGGC CGGCTACCGG CCGCACAAGA ACGATCCGGA GGCGGTCGGG
TCGCTGCTGC TCGGGCTCTA CGCCGACCCC GCGGACGAGG CCGACCCCGA GAACGCGACG
GACCCGGCTC GGGAAAGCCC GCTGCTGTCC GTCGGGGTCA CCTCGGCCTT CCCGATGGCG
CGCCGGCGGG AGCTCGTCCG CGAGCTGGCC CATCTCGTGG TGCCGATCGA CTCCCACCCC
TGGGCCCGCC AGGGCCCGGA GAACGCCGCG CAGCCGGGCG GCGACGCGGG CGAGGAACCG
GCAGCGGCCG CGGGGCAGCC GGCGCGCACG CCCTGGGACG TCGGGGAGAG CCGGTGGGCC
CGTGGCCGTG ACCTCTCGTT CGTCCCGCTG CGGCCCGAGC TGGTCGTCGA GGTGCGCTAC
GACCACATGG AGGGACCGCG CTTCCGGCAC ACCACGCAGT TCGTCCGCTT CCGGCCCGAC
CGTGACCCCG GCGGATGCAC CTACGCCCAG CTCGAGCGTC CGGTGCGGTT CGACATCGCC
GACGTCCTGC GCATCCCGCC GGACTGA
|
|---|
| Protein sequence | MREDRRVDLP VTPPVKPMLA RAAPQIPPDM LYEPKWDGFR ALVFRDGAEL EITSRNTRPM
TRYFPELVEV LLAALPDRCV LDGEIVVVGP NGLDFEELSQ RVHPATSRVA KLALETPVSF
VAFDLLALGD EAFTDQPFAR RRAVLEEVLA GHAGPAAPGT APARRIPSGV YLTPSTGELD
MARQWFELYE GAGLDGLVAK PPDGAYQPDK RAMFKIKHDR TADCVVAGYR PHKNDPEAVG
SLLLGLYADP ADEADPENAT DPARESPLLS VGVTSAFPMA RRRELVRELA HLVVPIDSHP
WARQGPENAA QPGGDAGEEP AAAAGQPART PWDVGESRWA RGRDLSFVPL RPELVVEVRY
DHMEGPRFRH TTQFVRFRPD RDPGGCTYAQ LERPVRFDIA DVLRIPPD
|
|---|
| |