| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5164 |
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| Symbol | |
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| ID | 5673498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 6188175 |
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| End bp | 6192788 |
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| Gene Length | 4614 bp |
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| Protein Length | 1537 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641244018 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001509428 |
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| Protein GI | 158316920 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0685376 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCCCCA CGGCGCAGCG GCTCGAGGAC GTCGTCCCAG GCGGTTCCCA GCAGCCGGTG
CAGGCCCCGC GAGAGGGTCT CCCGCGCCTC GCCGCGCTCC ATCAACGCCA GCAGCGCCCC
CTCGCCGACG ACGACGTCCC CGTTGGCGGC GATCGCGGCC CGGTGCAGGC CGAGATCGGG
AGTGAAGGAG TAGCGCTCCG CGTCGCAGCC GGGCGAGGGC CCCTCGACGG CCTCGAACGT
GACATGACCC AGCCGGCGCA GGACGGCGGC GAGCCGCCCG GCGGTTCCCG GGCTCGCCCG
CCATTCCAGA CCGGCATACA GGAAACCGGG CCGGCCTGGC TGCGCCGTCC AGGTCAGGGA
GACCGGGGCG GACAGGGCAC CGGACACGGC GAACTCCAGG TGCGGGCACA GTGCCGGCGG
ACATGCGAGC ACCGCCAACT TGCCCGGCAC GGCGAAGGAC GACGAGCCGG AAGACAGCTC
ACGAGCTGTC GAGGACATTG CCACCACGCG GGACCTCCGT CGACGAGGAA CGCCTTCCCC
TGCGTCTCGT CACGTCGGAC CCCTCGAATA CCAGTCGATC GTGCCATGAC CGGCGTTCGA
GGACTAGACC CACCCCCTCC CCTGGTGCCA CATGTGGTGA CCCCCACCCC GGCGGAAGGG
CTGGTCCGCG GGCCGCGCGG GCCCAACGTC CCGGCCGGCC ACGGGCGATG GTCGGGTCCG
CGCCGGGCCT GGTCCGCCCG TCCCGCCCCG TCAGTCGCGG GCAGGCCCCG GACCGGCCAC
GTGCCCCGGA TCCCGGCTGT ACGACCCCGC TGGTCCTGCC GTGCTGACTG GTCCTGCCGT
GCTGACTGGT CCCGCCGTGC TGACTGGTCC CGCCGTGCTG ACTGGTCCGA CCGAGCCGGT
CGGACCAGCC GGACCAGATG GGCCGGCTGC CCGGCCACCG ACGTCGAACA GGCCGCCTGG
CCCGGCCAGG CCACCGAGGG CGGCGGTGAG CTCGCTGGGG ACGATCCACA GCTTGCTGGC
CTGGCCCTCT GCCAGCCGCG GGAGCATCTG CAGGTACTGG TAGGCGAGGA GCTTCTGGTC
CGCGTCGCCC TCGTGGATGG CGCCGAAGAC GGTGCCGATG GCCTTCGCCT CGCCCTCGGC
GGTGAGGATC TGGGCCTCCC GGTGGCCTTC CGCCCGCAGG ATCGCGGCCT GCTTCTCGCC
CTCGGCCCGC AGGATCTCGC TCGCCTTGAC ACCCTCGGCG GTCAGGATCG CGGCCCGCCG
GTCGCGTTCG GCCCGCATCT GCTTCTCCAT CGAGTCCTGG ATGGAGCGGG GCGGGTCGAT
GGCCTTGAGC TCCACCCGGT TGACCCGGAT GCCCCACCGG CCGGTCGCGT CGTCGAGCAC
CCCGCGCAGC TGCCCGTTGA TCTGGTCGCG CGAGGTGAGC GTGCCCTCGA GGTTCATCCC
GCCGATCACG TTGCGCAGCG TGGTCACGGT GAGCTGCTCG ATGGCGCGGA TGAAGTCGGC
GATCTCGTAG GTGGCCGCGC GCGGGTCGGT GACCTGGAAG TAGATGACGG TGTCGATCCC
GACGACGAGG TTGTCCTCGG TGATGACCGG CTGGGGCGGG AAGCTGACCA CCTGTTCCCG
CAGGTCGATC CGCTCCCGGA TCCGGTCGAC GATCGGCAGC ACGATCGCCA GGCCCGGCGT
CAGCGTGCGG TGGTAGCGCC CGAGACGCTC GACCACCATC GCCCGGGCCT GCGGCACGAT
CCGCACGGTC CGCGCCAGGA AGATCAGGAC CACCAGTGCC GCGACCGCGG CGGCGATGAC
TCCGCCCATG TTCACTCCTC AAGCTCCCGA CGCGCGGTGT CGCCGCGCTC GACGTCCTCG
TGCACGATCA CGTGGGCACC GTCGACGCGC AGCACCCGCA CGGTGGCCCC GATCTCGAAC
TCGTCCGTCG CCGGGTACGA CCGCGCGGAC CAGACCTCGC CGGCGAGCCG GACTCGGCCG
GTCGACCCGT CGACCCGTTC CAGGACGACG GCCGGCGTTC CGACCAGGGC GTCGGTCCCG
GTACGCAGTA CGGGGCCGCT GGTGAGGTGG CGGCGGGCGA CCGGCCGCAG GCCGAACGTG
AGCCCGCCCG CGGCGACCGC GAACCCCACG AGCTGCACGA TCAGGTCGGC CCCCAGGACT
GCGAGGCCCG CCCCCACCAG CGCTGCGAGC GCGAACATGA CCAGGACCAG GTCGAGTGTG
AGCAACTCGC CGACGACGAG CGCGCCGGCA ACGATGATCC ACACAACCTC GTCCGCCATG
ACCATCACCC TAATAAGATC AACTATCCTG CGATCAACGA AACCTCAATG GCGGCAGTGG
ACGAACCGGT CGGGGTTCGC GCGCCCCCAA GTCACCGACG GGGCGCGAGC CGTAGGCTTC
GTGCGTATGT CGCAGGTCTG GCCTGGCAGC CCTTATCCCC TCGGTGCCAC CTTTGACGGA
TCGGGGACGA ACTTCGCGAT CTTCTCGGAG GTCGCCGAGC GTGTCGAGCT CTGTCTGTTC
GACGCCGTGG GCGCCGAGCG GAGGATCGAG CTGCGGGAGC GCGACGCGTT CGTGTGGCAC
GCCTACCTGC CGACGGTCCT GCCGGGACAG CGGTACGGAT ACCGGGTCCA CGGTCCCCAT
GATCCCGCGC GTGGCCACCG ATGCAACCCC AACAAGCTGC TGCTCGACCC GTACGCCAAG
GCGGTGGACG GCGAGGTCGA CTGGAACCAG GCCGTCTTCG GCTACGACTT CGGCGATCCC
GACAGCGTGA ACACGACCGA CTCCGCGCCG CACATGATGA AGTCCGTGGT GATCAGCCCG
TTCTTCGACT GGAACGGCGA CCGGCCACCG CGCCGCCCCT ACAGCGAGAC CGTGATCTAC
GAGGCGCACG TGCGCGGCCT GACCATGCGG CACGAGGGCC TGCCCGAGGA GTACCGGGGA
ACCTACGCGG GCGTGGCCCA CCCGGTGATG ATCGAGCACT ACCGCCGCCT CGGCGTGACG
GCGATCGAGC TCCTGCCGGT GCACCAGTTC GTCCACGACG AGCACCTGGT CAGCCGTGGG
CTGCGCAACT ACTGGGGCTA CAACTCCATC GCCTTCCTGG CGCCGCACAA CGGCTACTCC
GCCGCGGGCG GCGACGGCCG GCAGGTGCAG GAGTTCAAGG GCATGGTCCG CAACCTGCAC
GAGGCGGGCA TCGAGGTGAT CCTCGACGTG GTCTACAACC ACACCGCCGA GGGCAACCAC
ATGGGCCCCA TGCTGTGCTT CCGGGGCATC GACAACGCGG CCTACTACCG GCTGGTCGAC
GACGACCCGC AGTACTACAT GGACTACACC GGCACCGGCA ACAGCATGCG GGTCCGCCAT
CCACACGTGC TTCAGCTGAT CATGGACTCG CTGCGCTACT GGGTCACCGA GATGCACGTG
GACGGCTTCC GCTTCGACCT GGCGGCGACC CTGGCCCGGG AGTTCTACGA CGTCGACCGG
CTGTCGTCGT TCTTCGACCT CGTCCAGCAG GACCCGGTCG TCTCCCAGGT CAAGCTGATA
GCCGAGCCGT GGGACCTGGG TGAGGGTGGC TACCAGGTGG GCAACTTCCC CCCGCTGTGG
ACGGAGTGGA ACGGGAAGTA CCGCGACACC GTCCGCGACT TCTGGCGCGG GCAGGACCAC
GGCATCGCCG AGTTCGCCTC CCGGCTCACC GGCTCGTCCG ACCTCTACGA GGACAGCGGC
CGGCGCCCCT GGGCCTCGAT CAACTTCGTC ACCGCCCACG ACGGCTTCAC CCTGCACGAC
CTGGTCTCCT ACAACGACAA GCACAACGAG GCCAACGGCG AGGAGAACCG GGACGGCTCC
GACGACAACC GGTCCTGGAA CTGCGGCGTG GAGGGTCCGA CCGACGACGT CGCGGTCAAC
CGGCTGCGCG ACGCGCAGAC CCGCAACCTG CTCGCCACCC TGCTGCTCTC GCAGGGGGTG
CCCATGCTGG TAGCCGGCGA CGAGATGGGC CGAAGCCAAC AGGGGAACAA CAACGCCTAC
TGCCAGGACA GCCCGATCTC CTGGCTGGAC TGGTCCGACG CCGAGCGCAA CGCCGGTCTC
ATCGATTTCA CCGCCCAGCT CTCACATCTT CGGCGGACCC ATCCGGTCTT CCGGCGGCGG
CGGTTCTTCC AGGGCGAGTC GATCCGCGGC TCGGCCGGCG GCGAGGACAA CACCGGCAGC
CGACCCGACG GCGCGGCCGT CGTCGACCTG GCCGCCAAGG ACATAGTCTG GCTTCGTCCC
GACGGTAGCG AGATGTCCGA CACCGACTGG GAGTCCGGTA CGGCGCGCTC GCTCGGCTGT
TTCCTGAACG GGCACGGCAT CCCGGATCCC AACACGCTCG GCGAGGCGAT CGTCGACGAC
TCGTTCCTGC TGTTCTTCAA CGCCCACCAC GAGCCGATCC AGTTCCGGGT ACCACCGGTC
GACTTCGGCA CCACCTGGGA GATCATCGTG GACACGCGCT CGTCCAGCGC CGAGATCTCG
GCAGTGCTCG GTGGCACCGA TCTCGATCCG GTCGACGTCG ACCGGGTTGT CAAGGCCGAG
GACCCGCTCG AGGTGGACGC CCGCGCCACG CTTGTGCTCC GCCGTGTCAA CTGA
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| Protein sequence | MRPTAQRLED VVPGGSQQPV QAPREGLPRL AALHQRQQRP LADDDVPVGG DRGPVQAEIG
SEGVALRVAA GRGPLDGLER DMTQPAQDGG EPPGGSRARP PFQTGIQETG PAWLRRPGQG
DRGGQGTGHG ELQVRAQCRR TCEHRQLARH GEGRRAGRQL TSCRGHCHHA GPPSTRNAFP
CVSSRRTPRI PVDRAMTGVR GLDPPPPLVP HVVTPTPAEG LVRGPRGPNV PAGHGRWSGP
RRAWSARPAP SVAGRPRTGH VPRIPAVRPR WSCRADWSCR ADWSRRADWS RRADWSDRAG
RTSRTRWAGC PATDVEQAAW PGQATEGGGE LAGDDPQLAG LALCQPREHL QVLVGEELLV
RVALVDGAED GADGLRLALG GEDLGLPVAF RPQDRGLLLA LGPQDLARLD TLGGQDRGPP
VAFGPHLLLH RVLDGAGRVD GLELHPVDPD APPAGRVVEH PAQLPVDLVA RGERALEVHP
ADHVAQRGHG ELLDGADEVG DLVGGRARVG DLEVDDGVDP DDEVVLGDDR LGREADHLFP
QVDPLPDPVD DRQHDRQARR QRAVVAPETL DHHRPGLRHD PHGPRQEDQD HQCRDRGGDD
SAHVHSSSSR RAVSPRSTSS CTITWAPSTR STRTVAPISN SSVAGYDRAD QTSPASRTRP
VDPSTRSRTT AGVPTRASVP VRSTGPLVRW RRATGRRPNV SPPAATANPT SCTIRSAPRT
ARPAPTSAAS ANMTRTRSSV SNSPTTSAPA TMIHTTSSAM TITLIRSTIL RSTKPQWRQW
TNRSGFARPQ VTDGARAVGF VRMSQVWPGS PYPLGATFDG SGTNFAIFSE VAERVELCLF
DAVGAERRIE LRERDAFVWH AYLPTVLPGQ RYGYRVHGPH DPARGHRCNP NKLLLDPYAK
AVDGEVDWNQ AVFGYDFGDP DSVNTTDSAP HMMKSVVISP FFDWNGDRPP RRPYSETVIY
EAHVRGLTMR HEGLPEEYRG TYAGVAHPVM IEHYRRLGVT AIELLPVHQF VHDEHLVSRG
LRNYWGYNSI AFLAPHNGYS AAGGDGRQVQ EFKGMVRNLH EAGIEVILDV VYNHTAEGNH
MGPMLCFRGI DNAAYYRLVD DDPQYYMDYT GTGNSMRVRH PHVLQLIMDS LRYWVTEMHV
DGFRFDLAAT LAREFYDVDR LSSFFDLVQQ DPVVSQVKLI AEPWDLGEGG YQVGNFPPLW
TEWNGKYRDT VRDFWRGQDH GIAEFASRLT GSSDLYEDSG RRPWASINFV TAHDGFTLHD
LVSYNDKHNE ANGEENRDGS DDNRSWNCGV EGPTDDVAVN RLRDAQTRNL LATLLLSQGV
PMLVAGDEMG RSQQGNNNAY CQDSPISWLD WSDAERNAGL IDFTAQLSHL RRTHPVFRRR
RFFQGESIRG SAGGEDNTGS RPDGAAVVDL AAKDIVWLRP DGSEMSDTDW ESGTARSLGC
FLNGHGIPDP NTLGEAIVDD SFLLFFNAHH EPIQFRVPPV DFGTTWEIIV DTRSSSAEIS
AVLGGTDLDP VDVDRVVKAE DPLEVDARAT LVLRRVN
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