| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5139 |
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| Symbol | |
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| ID | 5673473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6158535 |
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| End bp | 6161174 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641243989 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001509403 |
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| Protein GI | 158316895 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00258236 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCTGAGG CGCCGCCGGT GACCACCGGA TCCGTGCCGA CGGCCGCGTC ATCCGCCGGG
GATACGCGGC CGGTCCAGGC TGCCCTGTCC GCGACCGACC GCACGCCGTC CACCGCGGAC
CGTGCGCCGC TCGCAGCCGA CCGCACGCCG TCCACCGCCG ACCGCACGCC GCTCGCGGGC
GGCCAGCTCC CGCGCACCGG GCCGTCGTCC GCCGCGCACG GCGGCCGTGA CGGCGCCGAG
GGCGGGTCGG CGTCCTCGCC CGTCCCGGAC GCCCCCGGAG AGGACGCCGA GAGCGGCTCG
CCGGTGGTGC CGCGGCTGGG GCACGAGTCG CCTCCGCTGC CTCGCCGGGT CCGCCGCTTC
TCCCGGCTGG GGGCGCACCG CGCCACGCCG CCCTCGTCGC TGGATCCGGT GCTGCGGGGG
CTGGTCGCGA ACCACCCGCG GATGGACATC GGGCCGGTGC AGCGGGCGTT CGAGGTGGCC
GACGCGGCCC ACGCCGGGCA GGTCCGTTTC TCCGGGCACC CGTACATCAC CCATCCGATC
GCGGTCGCCA GCATCCTGGC CGATCTCGGC ATGGACATCC CGACGCTGTG CGCCGCGCTG
CTGCACGACA CCCTGGAGGA GACCGACCTC CCGCCGGAGA CGATCGAGGC CGAGTTCGGC
CCGCAGGTGC TGCAGATCGT CGACGCCGTC AGCAAGCTCA ACCGGGTCAA GGTCGGCGAG
GCCGCGCAGA CCGAGACCAT CCGCCGGATG GTCGTCGCCA TGGCGCGCGA CCCGCGGGCC
CTGGTGGTCA AGCTCGCTGA CCGCCTGCAC AACATGCGGA CGCTGCGCTT CCTGCCCGAA
CACAAGCAGG AGCGCAAGGC GCGCGAGACG CTGGAGATCT ACGCGCCGCT GGCCCACCGC
CTCGGGATGA ACTCCCTCAA GTGGGAGCTG GAGGACCTGG CCTTCGCGGC GCTGTTCCCC
AAGCGCTACG ACGAGATCGT CCGCCTTGTG GCCGACCGGG CACCCAGCCG CGACGTCTAC
CTCACCGAGA CGTCCACGCA GGTGCAGACG CAGCTGGCCG AGGCGCGGAT CAAGGCCGTG
GTGACCGGCC GGCCGAAGCA CTACTACTCG ATCTACCAGA AGATGGTCGT CCGCGGCCGG
TCCTTCGAGG ACATCTACGA CCTCGTCGGC ATCCGGGTGC TGGTCGACTC GGTGCGGGAC
TGCTACGCGG CGCTGGGCAC CGTCCACGCG AACTGGAAGC CGATCCCGGG CCGGTTCAAG
GACTACATCG CGATGCCCAA GTACAACATG TACCAGTCGC TGCACACGAC GGTCATCGGG
CCCGAGGGCA AGCCGGTCGA GCTGCAGATC CGCACACACT CGATGCACAA CCGCGCCGAG
TACGGCATCG CGGCGCACTG GAAGTACAAG GAGGACGGCT CCGGCGCGGG CTCCCGGTCC
GGCGGTTCCC GCTCGTCGGG CTCGTCGGCG TCGCGGCGGG CTGCCGCGAA CAGCGGCGCC
GGGGGCACCG ACCCGAACCT GCGCAACTGG CTGCGCCAGA TCCTGGACTG GCAGCGCGAG
ACGGCCGACC CGGGGGAGTT CCTCGACAGC CTGCGCTTCG ACATGGCCGA CGACGAGGTC
TTCGTCTTCA CGCCGAAGGG CGACGTCATC CCGCTGCCGG TCGGGTCGAC GCCGATCGAC
TTCGCCTACG CCGTACACAC CGACATCGGC CACCAGTGCG TCGGCGCCCG GGTCAACGGC
CGGCTCGCGG CGCTCGACAC CGCGCTGGAG AACGGCGACA CGGTCGAGGT CTTCACCTCG
CGGGCCCACT CGGCCGGCCC GAGCGAGGAC TGGCTGACCT TCGTCCACTC GTCCCGCGCC
CGGACGAAGA TCCGCCAGTG GCACGCCCGG GAGCGCCGCG AGGACGCGAT CGTCGCCGGC
CGGGACGCGA TCGGCCGGGC GATGCGCCGC CACGGCCTCC CGCTGGCCCG CCTGATGACC
GGCGACGCGC TGCTGACCCT GGCGAAGGAC ATGCGCTACG CCGACGTCGC GGCGCTGTAC
GCGGCGGTCG GAGAGAAGAA CATCAGCGCG CAGGCGGTGG TGAACCGGCT GCTACAGGGG
CTCGGCGGTC CCGAGGGCGC CGAGGAGGAC GCGGCCGAGA TCGAGCTGCC GATCCGGGCC
CTGCGCCGGG CCACCGGTGA CGCCGGCGTG CTCGTCACCG GTTCCCCGGA CGTGTGGGCC
AAGCTGGCCC GCTGCTGCAC GCCGATGCCC GGCGACGCCA TCGCCGGCTT CGTCACCCGG
GGCAAGGGCG TGTCGGTGCA CCGCGCCGAC TGCGTCAACC TCGCCGGCCT GCGGGGCGGC
CCGCACGACC GGACGGTCGA GGTGGAGTGG GCGCCGTCAT CGGGCTCGGT CTTCCTGGTA
GTGATCCAGG TGGAGGCGCT GGACCGGACC CGACTGCTCT CCGATGTGAC CAGGGTGCTG
TCCGACCACC ACGTCAACAT CCTCTCCGCG TCGGTCACCA CGACGCGCGA GCAGGTGGCG
GTCAGCCGGT TCACCTTCGA GATGGGCGAC GCCAAGCATC TCGGTCACAT CCTCGACGCC
GTCAGATCCA CCGACGGTGT GTACGACTGT TTCCGAGTCA CCTCGGACGC ACAGAGCTGA
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| Protein sequence | MPEAPPVTTG SVPTAASSAG DTRPVQAALS ATDRTPSTAD RAPLAADRTP STADRTPLAG
GQLPRTGPSS AAHGGRDGAE GGSASSPVPD APGEDAESGS PVVPRLGHES PPLPRRVRRF
SRLGAHRATP PSSLDPVLRG LVANHPRMDI GPVQRAFEVA DAAHAGQVRF SGHPYITHPI
AVASILADLG MDIPTLCAAL LHDTLEETDL PPETIEAEFG PQVLQIVDAV SKLNRVKVGE
AAQTETIRRM VVAMARDPRA LVVKLADRLH NMRTLRFLPE HKQERKARET LEIYAPLAHR
LGMNSLKWEL EDLAFAALFP KRYDEIVRLV ADRAPSRDVY LTETSTQVQT QLAEARIKAV
VTGRPKHYYS IYQKMVVRGR SFEDIYDLVG IRVLVDSVRD CYAALGTVHA NWKPIPGRFK
DYIAMPKYNM YQSLHTTVIG PEGKPVELQI RTHSMHNRAE YGIAAHWKYK EDGSGAGSRS
GGSRSSGSSA SRRAAANSGA GGTDPNLRNW LRQILDWQRE TADPGEFLDS LRFDMADDEV
FVFTPKGDVI PLPVGSTPID FAYAVHTDIG HQCVGARVNG RLAALDTALE NGDTVEVFTS
RAHSAGPSED WLTFVHSSRA RTKIRQWHAR ERREDAIVAG RDAIGRAMRR HGLPLARLMT
GDALLTLAKD MRYADVAALY AAVGEKNISA QAVVNRLLQG LGGPEGAEED AAEIELPIRA
LRRATGDAGV LVTGSPDVWA KLARCCTPMP GDAIAGFVTR GKGVSVHRAD CVNLAGLRGG
PHDRTVEVEW APSSGSVFLV VIQVEALDRT RLLSDVTRVL SDHHVNILSA SVTTTREQVA
VSRFTFEMGD AKHLGHILDA VRSTDGVYDC FRVTSDAQS
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