| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5102 |
|---|
| Symbol | |
|---|
| ID | 5673437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6107384 |
|---|
| End bp | 6108862 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 641243953 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001509367 |
|---|
| Protein GI | 158316859 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0109044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0566058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC TGACGCTCGC CGAGGTGGCC GCCGCCACCG GTGGCCGGCT CACCGCCGGC
GCGGACCGGT TGGCCCCGGT CACGTCGGTG GTGATCGACT CCCGTCAGGT CGGCCCGGGC
GCGCTGTTCG TCGCCCTGCC CGGTGAGCGG GTGGACGGGC ACGACTTCGC CGCCGGCGCG
GTCGCGGCCG GCGCGGTGGC CGTCCTCGGC GCCCGGGAGA CGGGCGTGCC CACCGTCGTC
GCCGACCCGG CGGCGGCGCT GGCCGCGCTC GCCGCGCACC TGCGCGACCT CGCCCCGGCG
ACCGTGGTCG GGGTGACCGG CTCGGCCGGT AAGACGACCA CCAAGGACCT GCTGGCCGAC
CTGCTCGGCC GGCTCGGCCC GACGGTCGCC GCGGTGGGCT CGTTCAACAA CGAGATCGGC
CTGCCGCTGA CCCTGCTGCG CACCGAGCCC GACACCGCGT TCGTGGTGCT GGAGATGGGC
GCCCGCGGCA TCGGGCACAT CGCGACGCTG TGCGCGGTGG CCCGCCCGCA CGTCGGGCTG
GTACTCAACG TCGGGTCGGC GCACGTGGGG GAGTACGCCG ACGGGCGGAA CGGCATCGCC
GCGGCGAAGG GCGAGCTCGC AGAGGCGGCC ACCGGCCTGG TCGTGCTGAA CGCCGACGAT
CCGCTGGTGG CGGCGATGGC CGGCCGCGCC GGCGCCCAGG TGGTCACCTT CGGCCGCGCC
GCGGCGGCGG ACGTCCGCGC CGAGCGCGTC GAGGTGGGCG GTGACGGCCG GGCCGCGTTC
GACCTGCTGG CCGGCGGGGA GCGCCACCGG CTGCGCCTCG GCCTCGTCGG CGCGCACCAG
GTGGCCAACG CGCTGGCCGC CGCGGCGGTG GCGACATCAC TCGGCCTCGC GCCGGCCGAG
GCCGCGGCGG CGCTCGAGGA GGCCCGCCCG CGCAGCCGCT GGCGGATGGA GGTGACGACC
ACCCCGGACG GCGTGGTCGT GCTCAACGAC TCCTACAACG CGAACCCCGA GTCGATGCGC
GCGGCCCTGA CCGCGCTGAT GGACATGCGG GGAGCGGGGC GGGCGTGGGC GGTGCTGGGC
CCGATGGGCG AGCTCGGCGC CGACGCGGAC GCCGCGCACG ACACCCTGGG GCGGCTCGCC
GCCGGGCTGG GCGTGTCACG GCTGGTGGCG GTCGGCGCCG GGGCGCGCCG GGTGCATCAG
GCGGCGGAGC ACGAGGGCGC CTGGGCCGGC GAGTCGACCT GGGTGCCCGG GGTGGACGAG
GCGGTCGCGC TGCTGGCCGC GCAGGTCCGC CCGGGTGACG TGGTTCTGGT GAAGGCGAGC
CGGTCGTTCG GGCTCGAGCG GGTGGCCACG GGGCTGACCG CGGATGGTGG GGCCGGCCCA
GCGGGCCGGC GGGACGGCGC CGCCGGCGCC GCGATCGAGG GGATCGAGAA CACGTGGAAC
ACGGTGGGAC ACTCCGGCGA ACCAGGCGTG CGCGGGTGA
|
|---|
| Protein sequence | MIALTLAEVA AATGGRLTAG ADRLAPVTSV VIDSRQVGPG ALFVALPGER VDGHDFAAGA
VAAGAVAVLG ARETGVPTVV ADPAAALAAL AAHLRDLAPA TVVGVTGSAG KTTTKDLLAD
LLGRLGPTVA AVGSFNNEIG LPLTLLRTEP DTAFVVLEMG ARGIGHIATL CAVARPHVGL
VLNVGSAHVG EYADGRNGIA AAKGELAEAA TGLVVLNADD PLVAAMAGRA GAQVVTFGRA
AAADVRAERV EVGGDGRAAF DLLAGGERHR LRLGLVGAHQ VANALAAAAV ATSLGLAPAE
AAAALEEARP RSRWRMEVTT TPDGVVVLND SYNANPESMR AALTALMDMR GAGRAWAVLG
PMGELGADAD AAHDTLGRLA AGLGVSRLVA VGAGARRVHQ AAEHEGAWAG ESTWVPGVDE
AVALLAAQVR PGDVVLVKAS RSFGLERVAT GLTADGGAGP AGRRDGAAGA AIEGIENTWN
TVGHSGEPGV RG
|
|---|
| |