| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5086 |
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| Symbol | |
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| ID | 5673421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6086610 |
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| End bp | 6087551 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641243937 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001509351 |
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| Protein GI | 158316843 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00722052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000548014 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGCACGG CCGACACCGA CCGGCGCTCG CTGCCGGTCC CCGACGGCCT CGACGGCATC
CGCCTGGACG CCGCCATCGC CCGCATGTTC GGCCTGAGCC GCACGGCCGC CGCCACGCTC
GTTGACGACG GCCAGGTGAG CGTCGACGGC CAGGTCCGCG GCCGCTCCGA CCGGGTCAGC
GGCGGCGCCT GGCTGGACGT AGCCCTCCCC GCCCCGCCCC GTCCGCTCAC GGTGGAGCCC
ACCCCGGTCG GTGGCCTGCG CATCCTGCAC GACGACGACG ACATCGTGGT CGTCGACAAG
CCGGTCGGCG TGGCGGCCCA CCCGGCCCCG GGGTTCACCG GCCCGACGGT CATCGGCGCG
CTCGCCGCCG CCGGCTACCG GGTCTCCACC TCGGGCTCGG CCGAGCGCCA GGGCGTGGTG
CACCGCCTGG ACGTCGGCAC GACCGGGGCG ATGGCTGTCG CGAAGAGTGA ACGCGCCTAC
ACCCTTCTCA AGCGGGCCTT CCGGGAACGC GAGGTGGAGA AGGAGTACCG GGCGGTCGTC
CAGGGGCACC CGGACCCGCT GCGCGGGACG GTCGACGCCC CCATCGACCG CCATCCCCGC
CGGCCCGGCC TGTTCGCCGT CGTCGCGGAC GGCAAGCCCA GCGTGACCCA CTACGACACC
GAGGAGGCGT TCCGCGCCGC CTCGCTGCTG TCGGTGCGGC TGGAGACGGG CCGCACCCAC
CAGATCCGGG TGCACATGGC GGCGCTGCGG CATCCCTGCG TGGGCGACCT CGCCTACGGG
GCGGATCCGA CGCTGGCCCA GCGCCTCGGG CTGACCAGGC AGTGGCTGCA CGCTGCCCGG
CTCGCCTTCG CCCACCCGGC GGACGGCACC TGGGTCGAGT TCACCAGCCC CGATCCCGAT
GACCTGGCCG AGGCGGTGAA GCGGCTGCGC GACCAGACGT GA
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| Protein sequence | MSTADTDRRS LPVPDGLDGI RLDAAIARMF GLSRTAAATL VDDGQVSVDG QVRGRSDRVS
GGAWLDVALP APPRPLTVEP TPVGGLRILH DDDDIVVVDK PVGVAAHPAP GFTGPTVIGA
LAAAGYRVST SGSAERQGVV HRLDVGTTGA MAVAKSERAY TLLKRAFRER EVEKEYRAVV
QGHPDPLRGT VDAPIDRHPR RPGLFAVVAD GKPSVTHYDT EEAFRAASLL SVRLETGRTH
QIRVHMAALR HPCVGDLAYG ADPTLAQRLG LTRQWLHAAR LAFAHPADGT WVEFTSPDPD
DLAEAVKRLR DQT
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