| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5074 |
|---|
| Symbol | |
|---|
| ID | 5673409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6074075 |
|---|
| End bp | 6075211 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641243925 |
|---|
| Product | bifunctional RNase H/acid phosphatase |
|---|
| Protein accession | YP_001509339 |
|---|
| Protein GI | 158316831 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0328] Ribonuclease HI
[COG0406] Fructose-2,6-bisphosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0171562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0167384 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCTG GGCGCAGACT GGTCGTCGAG GCCGACGGAG GATCCCGCGG CAATCCCGGG
CCCGCCGGGT ACGGCGCCCT CGTCCGGGAC GCCGGCACCG GCCAGGTGCT GGCCGAGCGG
GCCGCCTCGA TCGGCACGGC CACCAACAAC GTCGCCGAGT ACGAGGGCCT GCTCGCCGGC
CTGCGGGCCG CCGCGGAGCT CGACCCGGGC GCCGACATCG AGGTCCGGAT GGACTCCAAG
CTCGTCGTCG AGCAGATGAG CGGCCGTTGG AAGATCAAGC ACCCGTCGAT GCGCCCGCTG
GCGGCCCAGG CCGCCGAGAT CGCCGCTGGG CTCGGGCGGG TCCGGTTCGT CTGGGTGCCC
CGGGCCCGCA ACGGCGACGC CGACCGGCTG GCGAACGAGG CGATGGACGC CGCCGCCGCC
GGCCGGTCCT GGGAACCCTC CGTCCCGCAG TCGCCCGACC CGCTGCCGCA CCAGGCGCCC
ACCACGAACC GGCTCTCCGG CTGGATGGCC CCGCCCGCTC CGCCGACCAC GACGGTCCTG
CTCCGTCACG GCCAGACGCC GCTGTCGGTG GAGAAGCGGT TCAGCGGAAC CGTGGAGGCC
TCACTCACCG ACCTCGGGCT GGAGCAGGCC GCCGCCGCTG CGGACCGGCT GCGCGGCGAG
CCGTTCGACG CCGTGATCAG CTCGCCGCTC AAGCGCGCCC GCCAGACCGC GGACGCGCTG
GGCCGCGACT ACCTGATCGA CGAGGACCTG CGGGAGACCG ACTTCGGCGC GTGGGAGGGG
ATGACGTTCG CCGAGGTCCG CGAGCGCTTC CCGGACGAGC TGAACGCCTG GCTCGCCGAC
CCGGCGGTGC CGCCGCCGGG CGGGGAGAGC CTGCTGAGCA CGGGCGCCCG TGTCGCGGCG
GCCCGCGACC GGATCATGGC CCAGTATCCC GCCGGGCGCG TCCTCGTGGT CTCGCACGTG
ACCCCGATCA AGGGGCTCAC CCAGCTCGCG CTCGCCGCCG AGCCGACCGT GCTCTACCGG
CTGCACCTGG ACCTGGTGTC GATCACCACC GTCGACTGGT ACTCCGACGG ACCCGCGGTG
CTGCGGGGCT TCAACGACAC CCACCACGTC GCCCATCTGG TCATTCCCGG CGAGTAG
|
|---|
| Protein sequence | MSAGRRLVVE ADGGSRGNPG PAGYGALVRD AGTGQVLAER AASIGTATNN VAEYEGLLAG
LRAAAELDPG ADIEVRMDSK LVVEQMSGRW KIKHPSMRPL AAQAAEIAAG LGRVRFVWVP
RARNGDADRL ANEAMDAAAA GRSWEPSVPQ SPDPLPHQAP TTNRLSGWMA PPAPPTTTVL
LRHGQTPLSV EKRFSGTVEA SLTDLGLEQA AAAADRLRGE PFDAVISSPL KRARQTADAL
GRDYLIDEDL RETDFGAWEG MTFAEVRERF PDELNAWLAD PAVPPPGGES LLSTGARVAA
ARDRIMAQYP AGRVLVVSHV TPIKGLTQLA LAAEPTVLYR LHLDLVSITT VDWYSDGPAV
LRGFNDTHHV AHLVIPGE
|
|---|
| |