Gene Franean1_4923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4923 
Symbol 
ID5673263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp5910751 
End bp5912985 
Gene Length2235 bp 
Protein Length744 aa 
Translation table11 
GC content73% 
IMG OID641243778 
ProductRecD/TraA family helicase 
Protein accessionYP_001509194 
Protein GI158316686 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.478208 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0184045 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCCGAC CCGCCGCCGC GCCGTTCCAG CTCGCCGTGC TCGAGGCCGT CCTCGAACGG 
ATCACCTACG CCAACGAGGA GACCGGGTAC ACCGTCGCCC GCGTCGACAC GGGCCGCGGC
GGCGACCTGC TGACGGTCGT CGGCGCGCTG CTCGGAGCCC AGCCCGGCGA GTCGCTGCGG
ATGCGCGGGC GGTGGGGCTC GCATCCCCAG TACGGCCGCC AGTTCCAGGT CGAGGACTAC
ACCACCGTCC TGCCGGCCAC TGTCCAGGGC ATCCAGCGGT ACCTCGGATC AGGCCTGGTC
AAGGGGATCG GGCCCCGGTT CGCCGAGCGC ATCGTCGAGC ACTTCGGCGT CGACGCGCTG
GACGTCATCG AGACCGAGCC GGCGCGGCTC ATCGAGGTTC CGGGTCTCGG CCCCAAGCGG
ACGAAGGCGA TCGCCGCGGC CTGGGAGGAA CAGAAGGCCA TCAAGGAGGT CATGGTCTTC
CTACAGGGCG TGGGCGTCTC GACCTCGCTG GCGATCAAGA TCTACAAGCA GTACGGGGAC
GCCTCGATCG GAGTGGTGCG CACCGAGCCC TACCGGCTGG CCGCCGACGT GTGGGGCATC
GGGTTCCGCA CCGCGGACAC CATCGCGCAA GCGGTCGGCA TCCCACACGA CAGCCCGCAG
CGCATCAAGG CCGGGCTCGC GTTCACCCTC TCCGAGGCCA CCGACAGCGG CCACTGCTTC
CTGCCCGAGA CCCGGCTGAT CGCCGACGCC GTGCGCATTC TCGGCGTCGA CACCGGCGCG
GTGATCGAGG GGCTCGGCGA GCTGATCACC GAGGAGGGGG TGGTGCGCGA GGACGTCCCC
GGCGAGGACC CGGAGCAGCC GGTCGCCGCG GTGTACCTCG TCCCGTTCCA CCGCGCCGAG
ATCTCCGTCG CGGGGCAGCT GCTGCGCCTG CTGCGGGCCG ACGAGGACCG CCTCGCCGCG
TTCGCCGCCG TCGACTGGGA GAAGGCGCTC GGCTGGCTGC ACACCCGTAC CGGGACCGAG
CTGGCGGCGG CGCAGCGCGA GGCGGTCACC CTCGCTCTCA CCTCCCGGGT GGCGGTGCTG
ACCGGCGGGC CCGGCTGCGG GAAGAGCTTC ACGGTGCGCT CGGTCGTCGA GCTGGCCCGC
GCCCGGCGGG CGAAGGTCGT CCTCACCGCC CCGACCGGAC GGGCCGCCAA GCGGCTCGCC
GAGCTGACCG GCCACGAGGC GTCGACGGTG CACCGGCTGC TCGAGCTGCG CCCCGGCGGC
GACGCGGCCT ACGACCGGGA CCGCCCGCTC GACGCCGACC TCGTCGTGGT GGACGAGGCG
TCCATGGTCG ACCTGCTGCT GATGAACAAG CTGGTCAAGG CCGTCCCGCC GGGCGGGCAC
CTGCTGCTGG TGGGCGACGT CGACCAGCTT CCCTCCGTCG GCGCCGGGCA GGTGCTGCGT
GATCTGCTCG CGTCCGGCAC GCCGATCCCG CACGTGCGGC TGACCCAGGT GTTCCGCCAG
GCCAGCGAGT CGGGCGTGGT GACCAACGCG CACCGCATCA ACCGCGGGGA CCATCCGCTG
GTGCGCGGCC TGGACGACTT CTTCCTCTTC GTCGCCGAGG AGGCCGAGGA CGCCGCCCGG
ATCACCGCGG AGGTGGTGGC GCGGCGGATC CCGGCCAAGT TCGGCCTCGA CCCGCGGCGC
GACATCCAGG TGCTCGCGCC GATGCACCGC GGCCCGGCCG GCGCCGGGGC GCTCAACATC
GCGCTGCAGG AAGCACTCAC GCCGAGCCTG CCGGACCGCC CCGAGCGCCG CTTCGGCGGC
CGGGTGTTCC GGGTCGGCGA CAAGGTCACC CAGGTGCGCA ACAACTACGA CAAGGGCGCG
AACGGGGTGT TCAACGGGAC GCTCGGGGTA GTCACCGCGC TCGACAACGA CAACCAGACC
CTGACCGTCC GCACCGACGA GGACGAGGAC GTCGACTACG AGTTCACCGA GCTCGACGAG
CTGACCCACG CCTACGCGGT GACTATCCAC CGTTCGCAGG GCAGCGAGTA CCCGGCCGTG
GTCATCCCGC TGACGACCAG CGCATGGATG ATGCTGCAGC GCAACCTGCT GTACACGGCG
GTGACGCGGG CGAAGAAGCT GGTGGTCCTG GTCGGCTCGC GCCGGGCCAT CGGGCAGGCG
GTCCGCTCGG CCGGCCACGG GCAGCGCCAC ACCGCGCTCG CGCACCGCCT GCAGTCCGCC
GGGCGCTCCG GATAG
 
Protein sequence
MSRPAAAPFQ LAVLEAVLER ITYANEETGY TVARVDTGRG GDLLTVVGAL LGAQPGESLR 
MRGRWGSHPQ YGRQFQVEDY TTVLPATVQG IQRYLGSGLV KGIGPRFAER IVEHFGVDAL
DVIETEPARL IEVPGLGPKR TKAIAAAWEE QKAIKEVMVF LQGVGVSTSL AIKIYKQYGD
ASIGVVRTEP YRLAADVWGI GFRTADTIAQ AVGIPHDSPQ RIKAGLAFTL SEATDSGHCF
LPETRLIADA VRILGVDTGA VIEGLGELIT EEGVVREDVP GEDPEQPVAA VYLVPFHRAE
ISVAGQLLRL LRADEDRLAA FAAVDWEKAL GWLHTRTGTE LAAAQREAVT LALTSRVAVL
TGGPGCGKSF TVRSVVELAR ARRAKVVLTA PTGRAAKRLA ELTGHEASTV HRLLELRPGG
DAAYDRDRPL DADLVVVDEA SMVDLLLMNK LVKAVPPGGH LLLVGDVDQL PSVGAGQVLR
DLLASGTPIP HVRLTQVFRQ ASESGVVTNA HRINRGDHPL VRGLDDFFLF VAEEAEDAAR
ITAEVVARRI PAKFGLDPRR DIQVLAPMHR GPAGAGALNI ALQEALTPSL PDRPERRFGG
RVFRVGDKVT QVRNNYDKGA NGVFNGTLGV VTALDNDNQT LTVRTDEDED VDYEFTELDE
LTHAYAVTIH RSQGSEYPAV VIPLTTSAWM MLQRNLLYTA VTRAKKLVVL VGSRRAIGQA
VRSAGHGQRH TALAHRLQSA GRSG