| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4889 |
|---|
| Symbol | |
|---|
| ID | 5673229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5867240 |
|---|
| End bp | 5867941 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641243744 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001509160 |
|---|
| Protein GI | 158316652 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.351284 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0730929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACC TGCCGGCGGC GGTCCTGTTC GACATGGACG GGCTGCTCGT CGACACCGAA
CCGCTGTGGA CGATCGCGGA GAACGAGGCC GCGGCGCGCC TGGGCGGGCG GTTCACGCCC
GAGATGAAGC TTGCCATGAT CGGCCACGGT ATCGACACCG CCGTCCCGAT CATGGTTTCG
ATGCTGGGGC GCCCCGTCTC GGACGAGCCC GCGACCACCG AGTTCCTGCT GCGCCGCTCC
GCGGAGCTGT TCCGGGAACC GGGCGCGGTC GTCGCGCAGC CCGGGGCACT GGAGCTGTTG
GGCGCCGTCA CGGCGGCCGG GGTGTCGACC GCCCTGGTCT CCTCGTCCTA CCGTGCGCTG
GTCGACGCGG TGGTCGCCGT GCTGGGCGCG CACCACTTCA CCGTGACGGT GGCCGGCGAC
GAGGTCGCCC GGCGCAAGCC GTTCCCGGAT CCCTACCTCG CCGCGGCCCG CCTGCTCGGC
GCCGATCCCG CCGCCTGCGT GGTCCTGGAG GACAGCCTCA CCGGGGCCGC GGCGGGCATC
GCGGCCGGCT GTGCGACGGT CCTCGTCCCG TCGATGCCGA TCGCGGCGGC CGATTTGCCC
GGCCAGGTCG CGGCCCGGGT CGACAGCCTG CACGCGGTCG ACCTGGCCAC GCTCGCCGGG
CTCGCCCGCC GTCCGGACCC GGCCCGCGCC GACTCCGGCT GA
|
|---|
| Protein sequence | MSDLPAAVLF DMDGLLVDTE PLWTIAENEA AARLGGRFTP EMKLAMIGHG IDTAVPIMVS
MLGRPVSDEP ATTEFLLRRS AELFREPGAV VAQPGALELL GAVTAAGVST ALVSSSYRAL
VDAVVAVLGA HHFTVTVAGD EVARRKPFPD PYLAAARLLG ADPAACVVLE DSLTGAAAGI
AAGCATVLVP SMPIAAADLP GQVAARVDSL HAVDLATLAG LARRPDPARA DSG
|
|---|
| |