| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4758 |
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| Symbol | |
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| ID | 5673100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 5681677 |
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| End bp | 5683746 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641243615 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001509031 |
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| Protein GI | 158316523 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCAGG GATCCGACCG ACCTCCTGTC ACGTTGGTGA TGAACGATAT GCGAGGACCG
GATATGAACG TTTCCGATAC CGTCAGTGTC ACCCGGGAAA GCATTCCCAC GCAGACCAGC
GCCGGCGACG CCACCGCACG CGACCTCACC GCGGCTGTCG GCAGCGAGCT CACCCGCGCG
CTACGCCTCG CCACCGACCA CCTGCTCGCG CTGCAGGACG GCACGGGCTG GTGGAAGTTC
GATCTCGAGA CGAACACGAG CATGGACGCC GAGGACCTCC TGCTGCGCGA GTACCTCGGT
ATCCGCACGA CCGAGGTGAC GGCGGCCTCG GCCCGGTTCA TCCGCTCCCG GCAGAGCGAC
GACGGATCGT GGCCGCAGTA CTTCGGCGGC CCGGGCGAGC TGTCCACCAC CGTCGAGTCG
TACATCGCCC TGCGCCTCGC CGGCGACGAC GCCTCCGCAC CGCACATGCT CAGCGCCGCG
ACCTGGGTCC GCGACCACGG CGGAGTTCCC GCGACCAGGG TGTTCACCCG GATCTGGCTG
GCGCTGTTCG GTTGGTGGCG CTGGGAGGAC CTGCCGGCGC TGCCCCCGGA GATCATGCTC
CTCCCCCGCC GCGCACCGCT GAACATCTAC TCCTTCGGGT CCTGGGCGCG CCAGACCCTG
GTGTCGCTGA CGGTCGTCTC CGCCCTCCGC CCGGTGCGGC CGGCGCCGTT CGACCTCGAC
GAGCTGTACC CGGACGGACC CGCCTCCGCC TGGTCCGGCG CCGGACCCTC CAACGTGCTC
GAGAGAATCA GCACGCGGTT CACCGCGAAA GAAATCTTCC TGGGTATCGA CCGACTGCTG
CACGTCTATC ACCGGCGCCC CGTTCGATCC ATGCGCAACC ATGCGCTGCG GGCCGCGGAG
CGGTGGATAA TCGCCCGCCA GGAGGCGGAC GGATGCTTCG GCGGAATTCA GCCACCCGCG
GTCTATTCGA TAATCGCGCT GCGGCTGCTC GGGTACGAGC TCGACCATCC GGTGCTGAAG
GCCGCCCTGC GGGCCCTCGA CGACTACAGC GTTACCCTCC CCGACGGCTC CCGCATGGTC
GAGGCGTCGC AGTCGCCGGT CTGGGACACC GCGCTGGCGG TGAACGCCCT CGCGGACGCG
GGTGCCACGG CCGCGATCGC GCCCGACCAC CCGGCGCTGG TCCGCGCCGC CGGCTGGCTG
CTCGGCCAGG AGGTCCGGCA CCGGCGTGGC GACTGGGCGG TCAACCATCC CGACGTCCCG
GCGAGTGGCT GGGCGTTCGA GTTCGAGAAC GACACCTACC CCGACACCGA CGACACGGCG
GAGGTTCTGC TCGCGCTGCG CCGGGTGCGC CACCCGGCGC GCGACGAGCT GGACGCCGCC
GAGCGCCGGG CGGTGGCCTG GCTGTTCGGG CTGCAGTCCA GCGACGGCGG ATGGGGCGCA
TACGACGCGG ACAACACCAG CACCATCCCG TACCAGATCC CGTTCGCCGA CTTCGGAGCC
CTCACCGATC CGCCCTCCGC GGACGTCACC GCGCATGTCG TCGAGCTGCT CGCCGAGGCC
GGCCTCGGCG GCGACGACCG CACGCGGCGC GGGGTGGACT GGCTGCTGGA CCACCAGGAG
GCCGACGGGT CGTGGTTCGG CAGGTGGGGC GTCAACTACG TCTACGGCAC CGGCAGCGTG
ATGCCCGCGC TGCGCGCCGC GGGGCTGGAG CCGTCCCATC CGGCCATGCG GGCGGGAGCG
GACTGGCTGC TCACCCACCA GAACGCCGAC GGCGGCTGGG GGGAGGACCT GCGCTCCTAC
ACCGATCCCG AGTGGTCGGG CCGTGGTGAG TCCACCGCGT CCCAGACGGC GTGGGCGATG
TTGGCCCTGC TGACGGTGGG CGACCAGCCC GAGGTGAGCG GGGCCCTCGC GAGGGGTGCC
CGGTGGCTGG CCGATCACCA GCGGCCGGAC GGCTCCTGGG ACGAGGACCA GTTCACCGGT
ACCGGGTTCC CCGGCGACTT CTACATCAAC TACCACGGCT ACCGGCTGCT GTGGCCGATC
ATGGCCCTCG GCCGCTACCT CCGCGGGTAG
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| Protein sequence | MFQGSDRPPV TLVMNDMRGP DMNVSDTVSV TRESIPTQTS AGDATARDLT AAVGSELTRA
LRLATDHLLA LQDGTGWWKF DLETNTSMDA EDLLLREYLG IRTTEVTAAS ARFIRSRQSD
DGSWPQYFGG PGELSTTVES YIALRLAGDD ASAPHMLSAA TWVRDHGGVP ATRVFTRIWL
ALFGWWRWED LPALPPEIML LPRRAPLNIY SFGSWARQTL VSLTVVSALR PVRPAPFDLD
ELYPDGPASA WSGAGPSNVL ERISTRFTAK EIFLGIDRLL HVYHRRPVRS MRNHALRAAE
RWIIARQEAD GCFGGIQPPA VYSIIALRLL GYELDHPVLK AALRALDDYS VTLPDGSRMV
EASQSPVWDT ALAVNALADA GATAAIAPDH PALVRAAGWL LGQEVRHRRG DWAVNHPDVP
ASGWAFEFEN DTYPDTDDTA EVLLALRRVR HPARDELDAA ERRAVAWLFG LQSSDGGWGA
YDADNTSTIP YQIPFADFGA LTDPPSADVT AHVVELLAEA GLGGDDRTRR GVDWLLDHQE
ADGSWFGRWG VNYVYGTGSV MPALRAAGLE PSHPAMRAGA DWLLTHQNAD GGWGEDLRSY
TDPEWSGRGE STASQTAWAM LALLTVGDQP EVSGALARGA RWLADHQRPD GSWDEDQFTG
TGFPGDFYIN YHGYRLLWPI MALGRYLRG
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