| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4743 |
|---|
| Symbol | |
|---|
| ID | 5673085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5664812 |
|---|
| End bp | 5665822 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641243600 |
|---|
| Product | 4-hydroxy-2-ketovalerate aldolase |
|---|
| Protein accession | YP_001509016 |
|---|
| Protein GI | 158316508 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR03217] 4-hydroxy-2-oxovalerate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGGC CGAACATCTA TCTGCAGGAC GTCACCCTGC GGGACGGCAT GCACGCCATC
CGGCACCGGG TCGACCCGGA GCGGGTCGGC GCCATCGTGG CCGCTCTCGA CAAGGCGGGC
GTCCGGGCGA TCGAGGTCAC CCACGGCGAC GGGCTGGCCG GCTCCAGCCT GACGTACGGC
CCCGGCAGCC ACACGAACTG GGAGTGGATC GAGGCGGCGG TCACCAACGC CTCGCAGGCG
ACGATCACCA CGCTGCTGCT ACCGGGCGTG GGCACGATCG CCGAGCTGCG CCGCGCGCAC
GCGATGGGGG TCGGCTCGGT CCGCGTCGCG ACGCACTGCA CCGAGGCGGA CGTCGCCGCC
CAGCACATCG CCGCGGCGCG CGAGCTCGGC ATGGACGTCT CCGGCTTCCT GATGATGAGC
CACATGGCCG AGCCGGCCGA GCTGGCCGCC CAGGCCAAGC TGATGGAGTC GTACGGGGCG
CACTGTGTCT ACGTCACCGA CTCGGGCGGC CGGCTGACCA CCGACCGCGT GCGCGAGCGG
GTCCGTGCCT ACCGCGACGT CCTGCGCCCG GACACCCAGA TCGGCATCCA CGCGCACGAG
AACCTCTCGC TGTCGGTCGC CAACTCGTTC GCCGCGGTCG AGGAGGGCGC CTACCGCGTC
GACGCGTCGC TCGCCGGCCA GGGAGCCGGC GCCGGCAACT GCCCGATCGA GCCGTTCGTC
GCGGTCGCGC TGCTGCTGGG CTGGGATCTC GACTGCGACC TGCTCGCGCT GGAGGACGCG
GCCGAGGACC TGGTCCGGCC GTTGCAGGAC CGTCCGGTCC GGGTCGACCG CGAGACGCTC
ACGCTCGGCT TCGCGGGCGT GTACTCCAGT TTCCTCCGGC ACGCCGAGAT CGCCGCCGAG
ACCTACGGCG TGGACGCCCG CAGCATCCTG ATCGAGGCGG GCCGGCGAAA GCTGGTCGGC
GGCCAGGAGG ACATGCTCGT CGACATCGCC CTGGCGATAC AGCCCAAGTA G
|
|---|
| Protein sequence | MSGPNIYLQD VTLRDGMHAI RHRVDPERVG AIVAALDKAG VRAIEVTHGD GLAGSSLTYG
PGSHTNWEWI EAAVTNASQA TITTLLLPGV GTIAELRRAH AMGVGSVRVA THCTEADVAA
QHIAAARELG MDVSGFLMMS HMAEPAELAA QAKLMESYGA HCVYVTDSGG RLTTDRVRER
VRAYRDVLRP DTQIGIHAHE NLSLSVANSF AAVEEGAYRV DASLAGQGAG AGNCPIEPFV
AVALLLGWDL DCDLLALEDA AEDLVRPLQD RPVRVDRETL TLGFAGVYSS FLRHAEIAAE
TYGVDARSIL IEAGRRKLVG GQEDMLVDIA LAIQPK
|
|---|
| |