| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4672 |
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| Symbol | |
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| ID | 5673014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 5579596 |
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| End bp | 5581635 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641243529 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001508945 |
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| Protein GI | 158316437 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.174921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.873986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGGGA ACCAGACCGT CGCCGAGCTC CTCGCCCGGT CGAACCGGCT CGGCGCCGAC
CCGCGCAACA CCAACTACGC GGGCGGCAAC ACCTCCGCCA AGGGCGTCGA GATCGATCCC
GTCACGGGCC GCGACGTCGA GCTGCTGTGG GTCAAGGGGT CGGGCGGCGA CCTCGGCACG
CTGACCGAGC CCGGCCTCGC CGTCCTCCGG CTGGACCGGC TGCGCGCGCT CGTGGACGTC
TACCCCGGCG AGGGCCGCGA GGACGAGATG GTCGCCGCCT TCGACTTCTG CCTGCACGGC
CGGGGCGGTG CCGCGCCCTC GATCGACACC GCCATGCACG GGCTCGTCGA CGCCTCGCAC
GTCGACCACC TGCACCCGGA CAGCGGCATC GCCCTCGCGA CCGCCGCCGA CGGCGAACAG
CTCACGAAGG ACGTCTTCGG CACGAAGGTC GCGTGGGTGC CGTGGCGGCG GCCGGGCTTC
CAGCTCGGCC TCGACATCGC GGCCGTGCGG CGGGACAACC CCGGCGCCGT CGGCTGCATC
CTCGGCGGGC ACGGCATCAC CGCGTGGGGC GACACGAGCG AGGAGTCCGA GCGCAACTCC
ACCTGGATCA TCGAGCAGGC GCGGCTCCAC CTCGAGCGGC ACGGGCGGCC GCGGCCCTTC
GGCGCCGTGG CCGACGGCCG GCGCGCGCTG CCAGCCGGGC AACGGCGGGC CAGGGCCGCC
GTGCTCGCGC CCCACCTGCG TGCGGTCGCG TCCCGCGACC ACCGCATGGT CGGCCACTTC
ACCGACAGCG ACGCCGTCCT GGAGTTCCTG GCCAGCGAGA AGCTGTTCGC CCTGGCCCGG
CTCGGGACGT CCTGCCCCGA CCACTTCCTG CGGACGAAGG TCCGCCCGCT GGTGCTCGAC
CTGCCGGCCG CGGCGTCACC CGAGGAGTGC GTCCGGCGGC TCGCGGAGCT GCACGAGGCC
TACCGCGCCG ACTACCGCGC GTACTACGAG CGGCATGCCA CCGCCGACTC GCCGCCGATG
CGCGGCGCGG ACCCGGCGAT CATCCTCGTG CCGGGCGTGG GCATGTTCTC CTACGGCCGG
GACAAACAGA CGGCACGGGT GGCCGGCGAG TTCTACGTCA ACGCGATCAA CGTGATGCGC
GGTGCCGAGG CGGTCTCGTC CTACGCGCCG ATCCCGGAGC GCGAGAAGTT CCGGATCGAG
TACTGGGCGT TGGAGGAGGC GAAGCTGCGC CGCCTACCGC CGCCCAAGCG GCACGCGGGC
CGGGTCGCGC TGGTCACCGG CGCGGCCAGC GGCATCGGCC GGGCCACCGC GTCCCGGCTC
GCCGCCGACG GCGCCTGTGT GGTCGTCGCC GACCTCGACG CGACCAGCGC CGTGTCGGCG
GCGGGCGAGC TCGGCGGCGC CGACGTCGCG GTCGGCGTCG GCGCCGACGT GACGAAGGAG
GCCGAGGTCG CGGCCGCCGT CGCGGCGGCA CTGCTCGCCT TCGGCGGGAT CGACCTCGTC
GTCAACAACG CGGGCCTGTC CATCTCCAAA CCGCTGCTGG AGACCACCGA GCGGGACTGG
GACCTGCAGC ACGACGTCAT GGCGAAGGGA AGCTTCCTCG TCGCGCGGGC CGCGGCGCGA
GCCATGATCG ACCAACGGCT CGGCGGTGAC ATCGTCTACA TCGTCTCCAA GAACGCGCTG
TTCGCCGGGC CGAACAACGT CGCCTACGGC GCCGCGAAGG CCGACCAGGC GCACCAGGTC
AGGCTGCTGG CGGCCGAGCT CGGCGAGCAC GGGATCCGGG TCAACGGCGT CAACCCGGAT
GGCGTCGTGC GTGGTAGCGG CATCTTCGCC GGCGGGTGGG GAGCCCAGCG TGCGGCGGTC
TACGGCATCC CCGAGGAGGA GCTCGGCGCC TTCTACGCCC GGCGGACGCT GCTCGGCCGG
GAGGTGCTGC CCGAGCACGT GGCCAACGCG GTCGCGGCCG TGTGCTCGAC CGAGCTCAGC
CACACGACCG GCCTGCTCGT CCCCGTCGAC GCCGGCGTCG CGGCCGCCTT CCTGCGCTGA
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| Protein sequence | MSGNQTVAEL LARSNRLGAD PRNTNYAGGN TSAKGVEIDP VTGRDVELLW VKGSGGDLGT
LTEPGLAVLR LDRLRALVDV YPGEGREDEM VAAFDFCLHG RGGAAPSIDT AMHGLVDASH
VDHLHPDSGI ALATAADGEQ LTKDVFGTKV AWVPWRRPGF QLGLDIAAVR RDNPGAVGCI
LGGHGITAWG DTSEESERNS TWIIEQARLH LERHGRPRPF GAVADGRRAL PAGQRRARAA
VLAPHLRAVA SRDHRMVGHF TDSDAVLEFL ASEKLFALAR LGTSCPDHFL RTKVRPLVLD
LPAAASPEEC VRRLAELHEA YRADYRAYYE RHATADSPPM RGADPAIILV PGVGMFSYGR
DKQTARVAGE FYVNAINVMR GAEAVSSYAP IPEREKFRIE YWALEEAKLR RLPPPKRHAG
RVALVTGAAS GIGRATASRL AADGACVVVA DLDATSAVSA AGELGGADVA VGVGADVTKE
AEVAAAVAAA LLAFGGIDLV VNNAGLSISK PLLETTERDW DLQHDVMAKG SFLVARAAAR
AMIDQRLGGD IVYIVSKNAL FAGPNNVAYG AAKADQAHQV RLLAAELGEH GIRVNGVNPD
GVVRGSGIFA GGWGAQRAAV YGIPEEELGA FYARRTLLGR EVLPEHVANA VAAVCSTELS
HTTGLLVPVD AGVAAAFLR
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