| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4665 |
|---|
| Symbol | |
|---|
| ID | 5673007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5568222 |
|---|
| End bp | 5569439 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641243522 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_001508938 |
|---|
| Protein GI | 158316430 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02631] xylose isomerase, Arthrobacter type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.025606 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.682712 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGAC AGCCCACTCC CGAGGACAAG TTCTCCTTCG GCCTGTGGAC GGTCGGCTGG
ACCGGCACCG ACCCGTTCGG CCTGCCGACC CGGACGGCCC TCGACCCGTG GGAGTACGCC
GACCGGCTGG CCGAGATAGG CGCCTGGGGC ATCACCCTGC ACGACAACGA CGTCTTCCCC
TTCGACGCCG ATGACGCCGC CGCCGCGCGG GCGTCCCGCC GGCTCAAGGA GGCCACCGAC
GCCTCCGGCC TGGTCATCGA GATGGTGACC ACGAACACCT TCACCCATCC CGTCTTCAAG
GACGGCGGCC TGACCTCGAA CGACCGCGGC GTGCGCCGGT TCGGCCTGCG CAAGGTGCTG
CGCGCGGTGG ATCTCGCGGC GCAGCTCGGC GCGACCACGT TCGTGATGTG GGGCGGCCGG
GAGGGCAGCG AGTACGACGG GTCGAAGGAC GTCTTCGCCG CGCTGGAGCG CTACCGGGAG
GGCCTGGACA CCGTCGCCGG CTACATCAAA AGCCAGGGCT ACGACCTGCG GATCGCGCTC
GAACCCAAGC CGAACGAGCC GCGCGGCGAC ATCCTCCTGC CCACCGTCGG GCATGCGCTG
GCGCTGATCG CCGAGCTGGA GAACGGCGAC ATCGTCGGGG TCAACCCGGA GACCGGGCAC
GAGCAGATGG CCAACCTCAA CTACACCCAC GCGCTCGGCC AGGCACTGTG GAGCGGGAAG
CTGTTCCACA TCGACCTCAA CGGGCAGCGG GGCCTGAAGT ACGACCAGGA CCTGGTCTTC
GGGCACGGCG ATCTCGTCTC GGCGTTCTTC ACCGTCGACC TGCTCGAGAA CGGCTTCCCG
GGCTACCCGG ACGGCCCCCG GTACACCGGT CCCCGCCACT TCGACTACAA GCCGTCGCGG
ACGGAGGGCA TGGCCGGGGT CTGGGAGTCG GCGCGGGCGT GCATGTCGAC CTACCTGCTG
CTCGCCGAGA AGGTGGCGGC GTTCCGCGCC GATCCCCTCG TCCAGGAGGC GATGGCCTAC
GCCGGCGTGT TCGAGCTGGC CAAGCCCACC CTCGCCCCCG GCGAGACCGC GGCCGATCTC
CTGGCCTCGG ACGACGGCTT CGACCCGGCC AAGGCGGCCG AGCGGGACTT CGGTTTCGTG
CGGCTCCAGC AACTGGCGAT CGAGCATCTC GTCGGCTCGC CCGCCCCGGG CTCGGCAGCC
GCCCGTTCCG CCGGCTGA
|
|---|
| Protein sequence | MPRQPTPEDK FSFGLWTVGW TGTDPFGLPT RTALDPWEYA DRLAEIGAWG ITLHDNDVFP
FDADDAAAAR ASRRLKEATD ASGLVIEMVT TNTFTHPVFK DGGLTSNDRG VRRFGLRKVL
RAVDLAAQLG ATTFVMWGGR EGSEYDGSKD VFAALERYRE GLDTVAGYIK SQGYDLRIAL
EPKPNEPRGD ILLPTVGHAL ALIAELENGD IVGVNPETGH EQMANLNYTH ALGQALWSGK
LFHIDLNGQR GLKYDQDLVF GHGDLVSAFF TVDLLENGFP GYPDGPRYTG PRHFDYKPSR
TEGMAGVWES ARACMSTYLL LAEKVAAFRA DPLVQEAMAY AGVFELAKPT LAPGETAADL
LASDDGFDPA KAAERDFGFV RLQQLAIEHL VGSPAPGSAA ARSAG
|
|---|
| |